Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G12920 187 / 6e-57 BRG3 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) AT1G79110 171 / 3e-50 BRG2 BOI-related gene 2, zinc ion binding (.1.2) AT5G45100 155 / 4e-45 BRG1 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G19700 150 / 4e-43 BOI, RING Botrytis Susceptible1 Interactor, SBP (S-ribonuclease binding protein) family protein (.1) AT1G45976 97 / 8e-23 SBP1 S-ribonuclease binding protein 1 (.1) AT1G60610 90 / 4e-20 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2), SBP (S-ribonuclease binding protein) family protein (.3) AT1G10650 86 / 3e-19 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT4G17680 76 / 2e-15 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) AT5G47050 74 / 1e-14 SBP (S-ribonuclease binding protein) family protein (.1) AT4G35070 73 / 1e-14 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031780 [exp] 448 / 3e-159 AT3G12920 260 / 3e-85 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Lus10018294 [exp] 166 / 2e-48 AT5G45100 266 / 3e-88 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10040613 [exp] 150 / 1e-42 AT5G45100 264 / 3e-87 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10014118 [exp] 95 / 5e-23 AT4G35070 171 / 7e-54 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10029136 [exp] 95 / 4e-22 AT1G10650 314 / 7e-107 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10019790 [exp] 92 / 8e-22 AT4G35070 170 / 1e-53 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10001131 [exp] 94 / 1e-21 AT1G45976 407 / 7e-143 S-ribonuclease binding protein 1 (.1) Lus10030891 [exp] 93 / 2e-21 AT1G10650 275 / 1e-92 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Lus10030597 [exp] 93 / 2e-21 AT1G10650 380 / 3e-132 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G439600 [exp] 273 / 3e-90 AT3G12920 256 / 1e-83 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.011G142700 [exp] 266 / 2e-87 AT3G12920 233 / 1e-74 BOI-related gene 3, SBP (S-ribonuclease binding protein) family protein (.1) Potri.015G118000 [exp] 177 / 5e-53 AT5G45100 259 / 2e-85 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.012G119200 [exp] 175 / 4e-52 AT5G45100 244 / 1e-79 BOI-related gene 1, SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.009G135400 [exp] 97 / 2e-23 AT4G35070 135 / 6e-39 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.014G027000 [exp] 96 / 2e-22 AT1G45976 380 / 2e-132 S-ribonuclease binding protein 1 (.1) Potri.010G042200 [exp] 96 / 3e-22 AT1G10650 393 / 2e-137 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.004G175500 [exp] 95 / 3e-22 AT4G35070 142 / 1e-41 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2) Potri.003G085800 [exp] 94 / 1e-21 AT1G32740 220 / 9e-70 SBP (S-ribonuclease binding protein) family protein (.1) Potri.012G082200 [exp] 92 / 4e-21 AT1G10650 266 / 2e-87 SBP (S-ribonuclease binding protein) family protein (.1), SBP (S-ribonuclease binding protein) family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031202 pacid=23151111 polypeptide=Lus10031202 locus=Lus10031202.g ID=Lus10031202.BGIv1.0 annot-version=v1.0 ATGGCAGTGGAGGCCAGGCATCTCAATCTCTTCCCTTCTCAACTCCTCGGCAGCAGCCGGGAGATGATGATGATGAATACAGTCGAGGCAGCGAATACGA CGACGAATAATATCATGTACAACGCACAATCCAGCTACGGCATGCTGTCTTCTCCTGAAGCAGCAGCAACGGCGCCGCTTCTCCCTATGTACGAATCCAA TTTTCATCACCGTACGACGACGACTCCGATGATCAAGTCGGAGATCAGTGGCTTGACGTCGTACAACATTAATACTCCGATCTCCAGAAAGCGGCCGAGA GATTCTTCTTCCGTCGCTGGCGACGGTGCCGGTCCTCCTCTGTTCTCTTATCCAGCTCTACCGCAATTGAACCAGGGGAAGAGCAGTCCTCATCAGATCT CGTTTCTCGGTCAGGATTTCTCGCTACAGATCCAGCAACAGCAGCTTGACGCCGATCAGCTTATTTCTCTTCATATGGAGAAAGTGAGAGGCGAATTGGA AGAAGAGAGGAGGAGGCAAGCGAGGAGGATAATCCAAGTGATCGAGGAAGGAATGGTGAAGCGGCTGAGAGCGAAAGAGGAAGAGATCAAGAAGATTGGG AAGCTGAATTGGGCTTTGGAGGAGAAAGTCAAGTCTCTGTGTATAGAGAATCAAATCTGGCGAGATCTAGCTCAGACGAACGAAGCCACCGCCAACGCTC TCCGCTCCAACCTCGAGAAAGTCCTCGAGAACGACGCCGCCACCGGTGCATTGATGGACGGCGCGGAGTCGTGCTGCGGCAGCAACGCGGAGAGTCATGA GGACGACGACGCCACCGGAAAATTCTCCGGCGACCGGATGTGTAGGAAATGCGGGAAGGAGGAATCGTGTGTGTTGCTGTTACCGTGCAGGCATCTATGC TTGTGCACCGGGTGTGAATCGGCGATCCATTCTTGTCCGATCTGTAAGGCGGCGAAGAACGCCAGCTTCCATGTAAACATGTCCTCGGCGTCGTGA
AA sequence Show only first row Show all	>Lus10031202 pacid=23151111 polypeptide=Lus10031202 locus=Lus10031202.g ID=Lus10031202.BGIv1.0 annot-version=v1.0 MAVEARHLNLFPSQLLGSSREMMMMNTVEAANTTTNNIMYNAQSSYGMLSSPEAAATAPLLPMYESNFHHRTTTTPMIKSEISGLTSYNINTPISRKRPR DSSSVAGDGAGPPLFSYPALPQLNQGKSSPHQISFLGQDFSLQIQQQQLDADQLISLHMEKVRGELEEERRRQARRIIQVIEEGMVKRLRAKEEEIKKIG KLNWALEEKVKSLCIENQIWRDLAQTNEATANALRSNLEKVLENDAATGALMDGAESCCGSNAESHEDDDATGKFSGDRMCRKCGKEESCVLLLPCRHLC LCTGCESAIHSCPICKAAKNASFHVNMSSAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031202 [exp]	0	1
AT2G01650		PUX2	plant UBX domain-containing pr...		Lus10034612 [exp]	3.5	0.8228
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	4.5	0.8169
AT4G22790			MATE efflux family protein (.1...		Lus10007006 [exp]	7.1	0.7960
AT5G51670			Protein of unknown function (D...		Lus10031110 [exp]	7.7	0.7725
AT5G17190			unknown protein		Lus10031957 [exp]	11.6	0.8142
AT3G12920		BRG3	BOI-related gene 3, SBP (S-rib...		Lus10031780 [exp]	12.1	0.8336
AT1G31320	AS2	LBD4	LOB domain-containing protein ...		Lus10018275 [exp]	17.7	0.8036
AT3G19950			RING/U-box superfamily protein...		Lus10010179 [exp]	19.0	0.7542
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10011042 [exp]	20.0	0.8009
AT5G53590			SAUR-like auxin-responsive pro...		Lus10005781 [exp]	33.2	0.7271

Compare expression of checked genes

Lus10031202 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.