Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55710 218 / 1e-72 AtTic20-V translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein AT2G47840 125 / 4e-36 AtTic20-II translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031781 [exp] 324 / 2e-114 AT5G55710 267 / 1e-91 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein Lus10020219 [exp] 108 / 4e-29 AT2G47840 222 / 1e-73 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1) Lus10026842 [exp] 103 / 2e-27 AT2G47840 219 / 1e-72 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G191700 [exp] 246 / 1e-83 AT5G55710 228 / 2e-76 translocon at the inner envelope membrane of chloroplasts 20-V, unknown protein Potri.013G084900 [exp] 108 / 1e-29 AT2G47840 196 / 2e-63 translocon at the inner envelope membrane of chloroplasts 20-II, Uncharacterised conserved protein ycf60 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09685 [flax] [poplar] DUF4870 Domain of unknown function (DUF4870)
Representative CDS sequence Show only first row Show all	>Lus10031203 pacid=23151148 polypeptide=Lus10031203 locus=Lus10031203.g ID=Lus10031203.BGIv1.0 annot-version=v1.0 ATGTCTGCTCTCCTCCGGATATCGCCGCCGTTAACTCTCTCAGCCAAACACCACCTACCAAGCTCCCGGATCCTGAAACCCTCCTCGACGCGGTTAATAG TGGCCGCCAAATCCAACGGCAGCAGCAACTCCGTCGACGCAGGGGACCGGATAATCTCCGCGGTGGCCTACTTCTACCCGTTCTTCGACGGTGTACAGTA CGGGAAGTATGTAATCAGCCAGTTCGCTCCAATCCAGACTCTAATCCAGCCGCTTTTTCCGGCTATTAAGGTCTACAAGAGCTTCCCGCTCAACGGCGTC CTGGTGTTCATGGCCCTCTACTTCGCCGTGGTGAGGAACTCCAACTTCAGCAGGTACGTGCGGTTCAACACGATGCAGGCCATTGTTCTGGATGTGCTCC TCATTTTCCCTGATTTGATTGAGAGGAGCTTCAATCCGAAAGAAGGCGTTGGTTTGGATATTATGATGAGCCTCGATAGTACTGTGTTTTTGTTCCTTTT GGTTAGCTTGGTTTATGGATCCAGTTCTTGCTTGCTCGGCCAGCTCCCTCGATTGCCCATTGTTGCTGATGCCGCTGACAGGCAAGTTCTGTGA
AA sequence Show only first row Show all	>Lus10031203 pacid=23151148 polypeptide=Lus10031203 locus=Lus10031203.g ID=Lus10031203.BGIv1.0 annot-version=v1.0 MSALLRISPPLTLSAKHHLPSSRILKPSSTRLIVAAKSNGSSNSVDAGDRIISAVAYFYPFFDGVQYGKYVISQFAPIQTLIQPLFPAIKVYKSFPLNGV LVFMALYFAVVRNSNFSRYVRFNTMQAIVLDVLLIFPDLIERSFNPKEGVGLDIMMSLDSTVFLFLLVSLVYGSSSCLLGQLPRLPIVADAADRQVL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031203 [exp]	0	1
AT5G55710		AtTic20-V	translocon at the inner envelo...		Lus10031781 [exp]	1.0	0.8803
AT2G14080			Disease resistance protein (TI...		Lus10023330 [exp]	4.2	0.8146
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	4.2	0.8690
AT5G36930			Disease resistance protein (TI...		Lus10023329 [exp]	4.9	0.8039
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10003005 [exp]	5.5	0.8553
AT2G47390			Prolyl oligopeptidase family p...		Lus10010007 [exp]	5.8	0.7976
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10037559 [exp]	7.9	0.8108
AT2G21960			unknown protein		Lus10006822 [exp]	8.0	0.8309
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	8.1	0.8044
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Lus10028731 [exp]	8.7	0.8012

Compare expression of checked genes

Lus10031203 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.