Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031782 [exp] 48 / 1e-07 AT2G32190 / unknown protein
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031204 pacid=23151106 polypeptide=Lus10031204 locus=Lus10031204.g ID=Lus10031204.BGIv1.0 annot-version=v1.0 ATGGCTCACCACGACGATCACCCTGCTGCAGCTCATCCAGCATATCCACCACCGGGTCAGGCATATCCACCACCGGGTCAGGCGTACCCACCTCCTCAAG GTTCGGAATACCCGCCACCGGGTCAAGCTTACCCACCACCACCACCGCCACAGTATCAGCCATACCCGCCGGTGCCGCCACCACAACAGGCAGCATACTA CCCTCATAATCCACATGCTGCTGCTGCTCCACCGCCAGCCGGCTACCCACCGGTTCCGGCTGATCATGGACATCAGCCGCCGCCTGCTGCCAACACTCAA AGTAAAGGAGATGGCTTCTTGAAAGGATGGCAAGTATACATTACACTCGCTGCTGCCATATGCTGCTGCTTTGCGTTCGAGGTCTGCTGCGACTGA
AA sequence Show only first row Show all	>Lus10031204 pacid=23151106 polypeptide=Lus10031204 locus=Lus10031204.g ID=Lus10031204.BGIv1.0 annot-version=v1.0 MAHHDDHPAAAHPAYPPPGQAYPPPGQAYPPPQGSEYPPPGQAYPPPPPPQYQPYPPVPPPQQAAYYPHNPHAAAAPPPAGYPPVPADHGHQPPPAANTQ SKGDGFLKGWQVYITLAAAICCCFAFEVCCD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32210			unknown protein		Lus10031204 [exp]	0	1
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10007702 [exp]	3.5	0.9027
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10032622 [exp]	4.9	0.8990
					Lus10018215 [exp]	5.9	0.8765
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10025200 [exp]	7.9	0.8737
AT3G53180		NodGS	nodulin/glutamine synthase-lik...		Lus10014407 [exp]	9.2	0.8738
					Lus10025141 [exp]	12.1	0.8839
					Lus10025225 [exp]	13.9	0.8771
					Lus10041663 [exp]	14.0	0.8495
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020492 [exp]	15.1	0.8363
AT2G17030			F-box family protein with a do...		Lus10013995 [exp]	15.9	0.8204

Compare expression of checked genes

Lus10031204 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.