Plant FIBer expression Database

Lus10031205 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G45030 704 / 0 Trypsin family protein (.1.2)
AT3G12950 694 / 0 Trypsin family protein (.1)
AT2G35155 686 / 0 Trypsin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031785
[exp]
1071 / 0 AT5G45030 738 / 0.0 Trypsin family protein (.1.2)
Lus10038347
[exp]
741 / 0 AT5G45030 834 / 0.0 Trypsin family protein (.1.2)
Lus10036208
[exp]
732 / 0 AT5G45030 830 / 0.0 Trypsin family protein (.1.2)
Lus10018312
[exp]
713 / 0 AT5G45030 791 / 0.0 Trypsin family protein (.1.2)
Lus10017140
[exp]
692 / 0 AT5G45030 776 / 0.0 Trypsin family protein (.1.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G143200
[exp]
835 / 0 AT5G45030 752 / 0.0 Trypsin family protein (.1.2)
Potri.012G121700
[exp]
767 / 0 AT5G45030 804 / 0.0 Trypsin family protein (.1.2)
Potri.015G121400
[exp]
751 / 0 AT5G45030 821 / 0.0 Trypsin family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0124 Peptidase_PA PF08192 Peptidase_S64 Peptidase family S64
Representative CDS sequence
>Lus10031205 pacid=23151013 polypeptide=Lus10031205 locus=Lus10031205.g ID=Lus10031205.BGIv1.0 annot-version=v1.0
ATGAGGCGGAACGGGTCGACAGCATCAGAGGATTCAGCATTGGATCACACAGAAAGAAACAACAATGGAAACAACACTAACAGCATGCCATCACTAACAC
TTCAAACAACTCTCCACCCTTACTGCGAGAGCAATGCTGCATACTTCTCCTGGCCAACTTCGAGCCGGCTCAACGATGCTGCTGAGGAAAGAGCAAACTA
CTTTGCCAACCTGCAGAAAGGAGTCCTTCCTGAGAGTACTCTTGGCAGGTTGCCACAGGGGCAACGTGCCACCACGTTGCTTGAGCTCATGACCATAAGG
GCATTCCACAGCAAGATCCTTCGGTGTTATAGCCTCGGTACTGCAATTGGGTTCCGGATTCGGAGAGGAGTTCTCACTGATGTCCCAGCCATTCTTGTCT
TTGTTTCCAGGAAAGTTCACAAGCAGTGGCTCACCCCTATTCAATGCCTCCCCAATGCTCTAGAGGGACCTGGAGGAGTGTGGTGCGATGTCGATGTGCT
CGAGTTCTCCTACTTCGGTGCACCCGAGCCAGCTCCGAAAGAACAGCTCTACACCGACATTGTTGACGATTTACGAGGGGGTAATCTCTACATCGGTTCA
GGTTCTCAGGTTGCGAGCCAGGAGACATATGGAACACTAGGAGCCATAGTGAGGAGCCAGACAGGTAGCAGACAAGTTGGTTTCTTGACCAACAGACATG
TTGCAGTTGACTTGGACTACCCAAATCAGAAGATGTTTCATCCTTTGCCGCCAACTCTTGGCCCTGGTGTTTACCTTGGTGCTGTTGAGAGAGCCACCTC
TTTCATCACTGATGACCTTTGGTATGCCATCTTCGCAGGCTCCAATCCCGAGACATTTGTGAGAGCAGACGGGGCATTCATCCCATTCGCGGACGATTTC
GACCTCTCAACGGTGACCACATCGGTGAAAGGAGTCGGAGAAGTCGGGAATGTCAAAACCATAGACTTGCAGTCACCAATAAGCAGCCTGATAGGGAAAC
AAGTGATGAAAGTTGGGAGGAGTTCTGGCCTAACCACAGGGACAGTGCTGGCCTATGCACTCGAGTACAACGACGAGAAGGGCATATGCTTCTTCACCGA
TTTCCTCGTCGTGGGATCGAACCAGCAGACGTTCGACCTCGAAGGCGACAGCGGGAGCATGATCATGATGAAGGGTAGTGAGAATGATAAGGCTAGGCCT
ATTGGGATCATATGGGGTGGCACTGCTAACCGTGGCAGGTTGAAGCTGAAAGTTGGGCAGCCTCCTGAGAATTGGACAAGTGGCGTTGACCTTGGGAGGC
TGTTGACTCTCCTTGAGCTTGATCTTATTACCACCAATGAAGGCCTCAAAGTTGCAATTCAAGAACAAAGAGCAGCATCAGCAACAGGAATCGGGTCAAC
GGTGGAAGACTTGTCACCTGTGGATTGCGGGATGCTGACGAAGGACAAAGACGAAGAGACATTCGAATCACTGGGTATTCAAATCCAACACATAATCCCT
CCTACTAGCGGCCATGATAATCCAGAGGCCAAACCACCCCTCGATCAAGGCGTGGAGCATCAGTTCATTCCGAACTTCGGCGAGCAATCCGCACTGCATC
AGGAAAACCAAAACCATCTTCCTCCTAAGAATGATCTGGCTTCGTTACGGAATCAAGATGACAATGGAGAAGAAGAAGAGATGATCTCTGTTTCATTGAA
GCTGGGCGACATTAATGAAGGTAAAAGGAAGCGTTCTGATGTTGTAACTGGAGATGATGATGATTGA
AA sequence
>Lus10031205 pacid=23151013 polypeptide=Lus10031205 locus=Lus10031205.g ID=Lus10031205.BGIv1.0 annot-version=v1.0
MRRNGSTASEDSALDHTERNNNGNNTNSMPSLTLQTTLHPYCESNAAYFSWPTSSRLNDAAEERANYFANLQKGVLPESTLGRLPQGQRATTLLELMTIR
AFHSKILRCYSLGTAIGFRIRRGVLTDVPAILVFVSRKVHKQWLTPIQCLPNALEGPGGVWCDVDVLEFSYFGAPEPAPKEQLYTDIVDDLRGGNLYIGS
GSQVASQETYGTLGAIVRSQTGSRQVGFLTNRHVAVDLDYPNQKMFHPLPPTLGPGVYLGAVERATSFITDDLWYAIFAGSNPETFVRADGAFIPFADDF
DLSTVTTSVKGVGEVGNVKTIDLQSPISSLIGKQVMKVGRSSGLTTGTVLAYALEYNDEKGICFFTDFLVVGSNQQTFDLEGDSGSMIMMKGSENDKARP
IGIIWGGTANRGRLKLKVGQPPENWTSGVDLGRLLTLLELDLITTNEGLKVAIQEQRAASATGIGSTVEDLSPVDCGMLTKDKDEETFESLGIQIQHIIP
PTSGHDNPEAKPPLDQGVEHQFIPNFGEQSALHQENQNHLPPKNDLASLRNQDDNGEEEEMISVSLKLGDINEGKRKRSDVVTGDDDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G45030 Trypsin family protein (.1.2) Lus10031205
[exp]
0 1
AT5G45030 Trypsin family protein (.1.2) Lus10031785
[exp]
1.0 0.8949
AT5G43060 Granulin repeat cysteine prote... Lus10019827
[exp]
4.8 0.8506
AT2G27430 ARM repeat superfamily protein... Lus10001881
[exp]
5.8 0.8853
AT4G16330 2-oxoglutarate (2OG) and Fe(II... Lus10037292
[exp]
20.1 0.8715
AT5G53850 haloacid dehalogenase-like hyd... Lus10015966
[exp]
20.8 0.8735
AT5G43430 ETFBETA electron transfer flavoprotein... Lus10021198
[exp]
21.4 0.8811
AT1G12910 LWD1, ATAN11 LIGHT-REGULATED WD 1, ANTHOCYA... Lus10012593
[exp]
21.7 0.8713
AT4G16210 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-C... Lus10016920
[exp]
27.3 0.8710
Lus10018472
[exp]
27.7 0.8606
AT4G16210 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-C... Lus10016919
[exp]
28.7 0.8582

Lus10031205 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.