Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 120 / 4e-31 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 120 / 4e-31 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G42020 120 / 5e-31 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 105 / 3e-26 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 105 / 7e-26 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G56410 104 / 1e-25 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 103 / 3e-25 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 103 / 3e-25 HSP70B heat shock protein 70B (.1) AT5G02490 100 / 3e-24 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT5G49910 99 / 1e-23 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032430 [exp] 167 / 7e-48 AT5G42020 1033 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10029455 [exp] 150 / 2e-42 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025336 [exp] 150 / 3e-42 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023423 [exp] 146 / 2e-40 AT3G12580 1000 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10023418 [exp] 145 / 5e-40 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10031213 [exp] 137 / 1e-37 AT5G28540 504 / 3e-174 heat shock protein 70 (Hsp 70) family protein (.1) Lus10031208 [exp] 135 / 2e-37 AT5G28540 386 / 1e-129 heat shock protein 70 (Hsp 70) family protein (.1) Lus10031114 [exp] 134 / 3e-36 AT5G28540 590 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023043 [exp] 126 / 6e-33 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143600 [exp] 124 / 1e-32 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.013G018000 [exp] 124 / 1e-32 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G087500 [exp] 124 / 2e-32 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 120 / 4e-31 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 106 / 4e-26 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 105 / 4e-26 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 105 / 7e-26 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054600 [exp] 105 / 7e-26 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 105 / 7e-26 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 105 / 8e-26 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10031206 pacid=23151161 polypeptide=Lus10031206 locus=Lus10031206.g ID=Lus10031206.BGIv1.0 annot-version=v1.0 ATGTACAAGTCTGGTGACGATAGGAACAGTGAGGGTTTGGATGCAAGGAATGAGGACAGCGAGGAAAAAAGGAACAAACGCAAAGATGATTTTAATTTGA TGTGCTTTTTTGTTGATTTTGAATTGTTTCAAATCGAGTCGATCGATGTTTTCAAGAAATATGCAGATTGCCTATACCTCCGTCCGGACCCGGAGCTGAA AGAGTATGTTATCGGAATAGATCTCGGCGAGACTTATTCACGCGTCGGTGTATACTACAATAACCGCGTAGAAATCATAGCCAACGAACAAGGGAACCGT AAAACCCCCTCCATGGTTGCCTTCACTGAATACTTCAATGACCCACAGAGACGGGCCATGAGAAAAGCTGGTGCTATTGCTGGGTTTAATCCGACTTTCG TCATCAACGAGCCTGATGCTGCAGCTGTCGCCTATGGTTTCGAAACGGGACTTATTGGCATGAAAGTTCTGGTCTTTAATCTTGGTGGCCGTACCTTTGA TGCCAGTATCTTGCGATATGAGGCTGAATTTCTTATCGTTTCAACCTACAGTGCAGATATCCATTTGGGAGGTGTGGACTTTGATCAAAGAGTTACGGAG TACTTGATCAATTTGATCAAGAACAAGTACGGAAAGGACATCAGTAGCAACACTAGTGCTGTAGCTAATCTCATGAAGGAAGCTGAATGA
AA sequence Show only first row Show all	>Lus10031206 pacid=23151161 polypeptide=Lus10031206 locus=Lus10031206.g ID=Lus10031206.BGIv1.0 annot-version=v1.0 MYKSGDDRNSEGLDARNEDSEEKRNKRKDDFNLMCFFVDFELFQIESIDVFKKYADCLYLRPDPELKEYVIGIDLGETYSRVGVYYNNRVEIIANEQGNR KTPSMVAFTEYFNDPQRRAMRKAGAIAGFNPTFVINEPDAAAVAYGFETGLIGMKVLVFNLGGRTFDASILRYEAEFLIVSTYSADIHLGGVDFDQRVTE YLINLIKNKYGKDISSNTSAVANLMKEAE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10031206 [exp]	0	1
					Lus10039431 [exp]	1.0	0.7922
					Lus10030050 [exp]	6.5	0.6992
AT5G64410		ATOPT4	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10035644 [exp]	9.6	0.6955
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10042370 [exp]	14.0	0.7261
AT4G14103			F-box/RNI-like superfamily pro...		Lus10020634 [exp]	21.8	0.6472
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10023106 [exp]	27.7	0.6288
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	29.0	0.6878
AT5G26594		ARR24	response regulator 24 (.1)		Lus10004775 [exp]	31.0	0.6844
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10026765 [exp]	33.5	0.6844
					Lus10007779 [exp]	35.0	0.6699

Compare expression of checked genes

Lus10031206 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.