Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56050 544 / 0 GTP-binding protein-related (.1) AT1G30580 219 / 1e-67 GTP binding (.1) AT1G07615 65 / 3e-11 GTP-binding protein Obg/CgtA (.1) AT5G18570 64 / 6e-11 EMB3138, ATOBGL, CPSAR1, EMB269, ATOBGC EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) AT1G72660 46 / 2e-05 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT1G17470 46 / 3e-05 ATDRG1 developmentally regulated G-protein 1 (.1.2) AT4G39520 45 / 5e-05 GTP-binding protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031789 [exp] 602 / 0 AT1G56050 626 / 0.0 GTP-binding protein-related (.1) Lus10023261 [exp] 222 / 1e-68 AT1G30580 711 / 0.0 GTP binding (.1) Lus10038543 [exp] 220 / 5e-68 AT1G30580 713 / 0.0 GTP binding (.1) Lus10024297 [exp] 69 / 2e-12 AT5G18570 171 / 2e-46 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10034166 [exp] 64 / 7e-11 AT5G18570 647 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10043418 [exp] 64 / 8e-11 AT5G18570 724 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Lus10016548 [exp] 59 / 2e-09 AT1G07615 511 / 1e-178 GTP-binding protein Obg/CgtA (.1) Lus10040813 [exp] 58 / 5e-09 AT1G07615 293 / 1e-95 GTP-binding protein Obg/CgtA (.1) Lus10037676 [exp] 45 / 5e-05 AT1G72660 756 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G457900 [exp] 564 / 0 AT1G56050 663 / 0.0 GTP-binding protein-related (.1) Potri.011G143700 [exp] 335 / 1e-114 AT1G56050 357 / 1e-122 GTP-binding protein-related (.1) Potri.001G465900 [exp] 223 / 4e-69 AT1G30580 681 / 0.0 GTP binding (.1) Potri.011G164000 [exp] 223 / 5e-69 AT1G30580 691 / 0.0 GTP binding (.1) Potri.002G029600 [exp] 68 / 4e-12 AT5G18570 144 / 7e-37 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.010G022400 [exp] 65 / 5e-11 AT5G18570 687 / 0.0 EMBRYO DEFECTIVE 3138, EMBRYO DEFECTIVE 269, chloroplastic SAR1, OBG-like protein, GTP1/OBG family protein (.1) Potri.001G239600 [exp] 62 / 3e-10 AT1G07615 511 / 3e-178 GTP-binding protein Obg/CgtA (.1) Potri.003G063500 [exp] 45 / 5e-05 AT1G72660 678 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.001G170300 [exp] 45 / 5e-05 AT1G72660 677 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) Potri.007G080900 [exp] 45 / 5e-05 AT4G39520 647 / 0.0 GTP-binding protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF01926 [flax] [poplar] MMR_HSR1 50S ribosome-binding GTPase CL0072 [flax] [poplar] Ubiquitin PF06071 [flax] [poplar] YchF-GTPase_C Protein of unknown function (DUF933)
Representative CDS sequence Show only first row Show all	>Lus10031209 pacid=23151160 polypeptide=Lus10031209 locus=Lus10031209.g ID=Lus10031209.BGIv1.0 annot-version=v1.0 ATGGCGAGAACAGCTTGCGCCAACTTCATTCCCGCCTTAGCACTTCTCCCAAAGAAGTCATCTCCTTCGTCCATCTTCAATGGCGGCGTGGTGATTCGCC GGAGACTTTCGTCTTCATCTTCCAGGATTAGCATGAGCTTGAAAGCAGGCATCGTCGGCCTGCCTAACGTCGGCAAGTCGACTCTCTTCAACGCCGTTGT TGAGAACGGGAAAGCTCAGGCGGCGAATTTCCCGTTCTGTACTATCGAACCGAATGTAGGAGCTGTTGCAGTTCCAGATCCTCGACTGAGCGTGCTTTCT GATCTCAGTAAATCGCAAAAGGCAGTGCCGACCTCTATTGAGTTCGTTGATATTGCTGGTCTTGTTAAGGGAGCAAGCCAAGGCGAGGGACTGGGAAACA AGTTCTTATCACATATCCGGGAGGTCGACTCTATTGTTCAGGTTGTACGATGCTTCGAGGATAATGACATTGTTCACGTGAACGGGAGAGTGGATCCCAA GGATGATATTGATGTGATAAACTTGGAGCTTGTATTCTCAGATGTAGACCAGATTGAAAAAAGACTGGAGAAGCTAAAGAAAGGGAAGCCGAAGGATTCA CAATCTAAAGTCAAGGAGGAAGCAGAAAAGTCTGCCTTGGAGAAAATCCAAACTGCTCTTATGGATGGAAAACCAGCCAGGTCTGTAACTTTAACGGATT TTGAGAAGGATGCTATAAAGCATCTCTGCTTGCTTACCATGAAACCTATCATATATGTGGCAAACGTTGCGGAAAATGAACTAGCTGTTCCTGAAGATAA TCCTCATGTAAAAGAAGTGATGAATGTAGCAGCCAAATTGCAATCTGGAATAGTCACTGTTTCAGCACAGGTTGAATCAGAGCTTTCGGAGTTGCCGCTT GAAGAAAGGTCGGAATACTTGAATTCACTTGGTGTAAGTGAAAGTGGACTGGGCAATCTTGTGAGGGCAACATATGACCTTTTAGGATTGCGTACATACT TTACTTCGGGTGAGAAGGAAACTAAAGCATGGACCATTCGCACAGGAATGACTGCACCACAGGCTGCTGGAGTCATACACTCAGACTTTGAAAGAGGTTT CATTCGAGCTGAGACGGTTGCATACGACGATTTTGTTGCTGCTGGCTCACTTTCAGCCGCAAAGGAAAAAGGACTTGTAAGTTTCTTTTACTGA
AA sequence Show only first row Show all	>Lus10031209 pacid=23151160 polypeptide=Lus10031209 locus=Lus10031209.g ID=Lus10031209.BGIv1.0 annot-version=v1.0 MARTACANFIPALALLPKKSSPSSIFNGGVVIRRRLSSSSSRISMSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGAVAVPDPRLSVLS DLSKSQKAVPTSIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSIVQVVRCFEDNDIVHVNGRVDPKDDIDVINLELVFSDVDQIEKRLEKLKKGKPKDS QSKVKEEAEKSALEKIQTALMDGKPARSVTLTDFEKDAIKHLCLLTMKPIIYVANVAENELAVPEDNPHVKEVMNVAAKLQSGIVTVSAQVESELSELPL EERSEYLNSLGVSESGLGNLVRATYDLLGLRTYFTSGEKETKAWTIRTGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSLSAAKEKGLVSFFY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G56050			GTP-binding protein-related (....		Lus10031209 [exp]	0	1
AT1G26090			P-loop containing nucleoside t...		Lus10034265 [exp]	5.3	0.8936
AT1G56050			GTP-binding protein-related (....		Lus10031789 [exp]	6.0	0.9140
AT5G44600			S-adenosyl-L-methionine-depend...		Lus10001217 [exp]	12.2	0.9046
AT1G64150			Uncharacterized protein family...		Lus10024713 [exp]	14.1	0.8941
AT3G48820			Glycosyltransferase family 29 ...		Lus10043193 [exp]	19.7	0.8177
AT1G23360		MENG	S-adenosyl-L-methionine-depend...		Lus10033614 [exp]	24.2	0.8863
AT3G13120			Ribosomal protein S10p/S20e fa...		Lus10007111 [exp]	25.8	0.8845
AT2G31840		MRL7-L	Mesophyll-cell RNAi Library li...		Lus10033475 [exp]	31.0	0.8721
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Lus10042381 [exp]	33.4	0.8477
AT5G14910			Heavy metal transport/detoxifi...		Lus10014520 [exp]	34.5	0.8831

Compare expression of checked genes

Lus10031209 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.