Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79090 627 / 0 unknown protein AT4G14990 518 / 4e-173 Topoisomerase II-associated protein PAT1 (.1) AT3G22270 516 / 2e-172 Topoisomerase II-associated protein PAT1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031788 [exp] 1301 / 0 AT1G79090 763 / 0.0 unknown protein Lus10039002 [exp] 491 / 1e-161 AT3G22270 734 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10010445 [exp] 468 / 8e-153 AT4G14990 721 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10027297 [exp] 473 / 7e-152 AT3G22270 694 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Lus10012099 [exp] 451 / 3e-146 AT3G22270 702 / 0.0 Topoisomerase II-associated protein PAT1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G143900 [exp] 908 / 0 AT1G79090 734 / 0.0 unknown protein Potri.001G457800 [exp] 861 / 0 AT1G79090 687 / 0.0 unknown protein Potri.006G021900 [exp] 592 / 0 AT3G22270 699 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020100 [exp] 581 / 0 AT3G22270 733 / 0.0 Topoisomerase II-associated protein PAT1 (.1) Potri.016G020600 [exp] 455 / 2e-150 AT3G22270 540 / 0.0 Topoisomerase II-associated protein PAT1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031210 pacid=23151164 polypeptide=Lus10031210 locus=Lus10031210.g ID=Lus10031210.BGIv1.0 annot-version=v1.0 ATGGACAGGTTCATGAACGGAGGCGGGATTCCACAGGGTTCCAAGATGGAGGAGCCCAAACAATTCGGAGTTAGTTCTTCAGGGGATGCTTTGTTTGATG CATCTCAATATGCATTTTTTGGGAAAGATCTTGTTGAGGAAGTGGAGCTGGGTGGATTGGACGACGAGGGGGAAGATTCTGTTTCTGCTCCGGTTGAACT GGAGGAAGAGGAGTTCTTATTTGATAGACAAGAGGGCGAGGGTATAGGATCTCTATCGGATATTGATGATCTTAGCAGTACGTTTTCAAAGTTAAACAAG GATGTAGGTGGACCAACAAGATTAGGTGTCATTTCTGACAGGGGTTCAAGAGAAAGTTCATCTGCTGCTGAGTGGGTTCAAGGGGAAGAGGTCCCTAATT GGTTTGATCAGCAGACATTTGATGCAGACAGCTCTCAAGATGGCAAGTGGTCGTCACATCCCTTTTCCTCTTCTGCTTGGCCAGGAGATCCGAAAAATCT GTATCGAACAACTTCATATCCAGAGCAACCACAGCAGCTCCACCAGCAAACACACCAACATTTCTCAAGCGAACCGATTCTTGTCCCAAAACCATCTTAT CCTTCATATCCTCCTGACGGGCAATCGCCACATGCTTCACCAAATCATAGTCAGCTAAATACTCCATACCTCACTGGTAACTCCCAGATGTCACTATCTC CGCAAAACCTTTCCCCTTTCTCGAACCCTCAGCTTCAAATGCCTGGTGTGCGCCATGGATCACCACAGTTTGGCATAAACTTGCCACAGTATGCCTCTGG CCTTTCTGGTAGTAATCGTCCACCAAGTCAATGGGCTAACCAGTCTGGAATGTTTCCTGGAGACCATAATAACCGCTTAAACAATGTGCTGCAAAAGCAA ATGCCTCATCAAAATGGGTTAATGCCTCCACAGATGATGCCTCACTTACAGCAGCAGCCACACAGACTGCACCATCAGGGGCCACCATCTTTGAATCATT TATCAGGTATGCAGAGTCAGCTATTTGGCACGCATCTCCGTCCATCGCGTCCAATGATGCCCAGTGCAATTCTCGGTGCTGGTGACTCGAGAGATCAAAT GCCAACTTCAGCTCAGAGAGGTAGAATGAATATGGGATATTCTCAAATGGGTTTTGATGCAAATAGGCATAGAATGGGCTGGCCAAGGTTTAGATCCAGG TATATGTCATCTGATGAACTTGAGGGTATTTTAAGAATGCAGCTTGCTGCAACTCACAGCAATGATCCCTACGTGGATGATTATTATAACCAGGGTCGTC GAGCGAAAAAATCAGCTGGGGCTAAGCTTCGACATCATTTCTGTCCGACCCACTTGAGAGATCTTCCTCCCGGGGCACGTGTGAATTCAGAGCCACATGC ATTTCTAAAGGTTGATGCACTTGGTAGGGTTCCTTTCTCATCCATCCGTAGGCCCCGTCCTCTTCTCGAGGTTGAACCCCCAAATTCTTCCGATGGAGGT AATAATGAGCACGCCATTTCTGTGAAGCCCTTAGAGCAGGAGCCTTTGCTTGCTGCTAGAGTCACAATTGAAGATGGTCTTTGCCTACTCCTTGATGTAG ATGATATTGACCGGTTGCTTGAATTTAATCCGCTCCCTGATGGTGAGCTAGCTCACTTGAGACAGCGTCGTCAGGCTTTGTTAGAAGGGCTGGCAACCTC TCTGCAATTGGTTGATCCACTTGGAAAGAATGGACAGACAGTTGGGCTTGCTGCAGAGGATGATATTGTTTTCTTAAGGGTAGCATCGTTGCCTAAGGGC CGGAAACTTCTCTCGAGATACTTGCAACTTCTCTTCCCAGCTGGTGACCTCTTACGGATCGTATGTATGGCCATCTTTCGTCATTTAAGGTTTCTTTTCG GAGTTACCCCCTCGGATGCCCGAGCTGCCGAAACTATAGACCACCTTGCGAGGACCGTATCATTTTGTGTCCGTCGGATGGATCTCGGTTCACTTAGTGC GTGCCTCGCTGCTGTAGTGTGCTCTTCTGAGCAGCCTCCATTACGCCCACTTAGTAGCTCAGCTGGAAATGGGGCATCTGTCATCGTAGGCTCAGTTCTT GAACGTGCCTCTGAAATGTTGACCGAAGTCCACGATGCTAGTAATTACGGTGTTGCGAATCGAGCTCTTTGGAATGCCTCATTTGATGAGTTCTTCGGCC TCCTCATCAAGTACTGTCTGAACAAGTACGACGGTATCATGCAGTCTCCTGGATTAGATCCAGCTGAAGCTATCAAGAGGGAATTGCCGATGGAGCTCTT GCGTGCAAGTGTTCCGCACACGAACGACTATCAGAAGAAGATGATGTACGATCTTTCTCAGCGATCTCTCGCTGGCCAGGACAAAGGCAACGGCAGCCTA GGAGTTTGA
AA sequence Show only first row Show all	>Lus10031210 pacid=23151164 polypeptide=Lus10031210 locus=Lus10031210.g ID=Lus10031210.BGIv1.0 annot-version=v1.0 MDRFMNGGGIPQGSKMEEPKQFGVSSSGDALFDASQYAFFGKDLVEEVELGGLDDEGEDSVSAPVELEEEEFLFDRQEGEGIGSLSDIDDLSSTFSKLNK DVGGPTRLGVISDRGSRESSSAAEWVQGEEVPNWFDQQTFDADSSQDGKWSSHPFSSSAWPGDPKNLYRTTSYPEQPQQLHQQTHQHFSSEPILVPKPSY PSYPPDGQSPHASPNHSQLNTPYLTGNSQMSLSPQNLSPFSNPQLQMPGVRHGSPQFGINLPQYASGLSGSNRPPSQWANQSGMFPGDHNNRLNNVLQKQ MPHQNGLMPPQMMPHLQQQPHRLHHQGPPSLNHLSGMQSQLFGTHLRPSRPMMPSAILGAGDSRDQMPTSAQRGRMNMGYSQMGFDANRHRMGWPRFRSR YMSSDELEGILRMQLAATHSNDPYVDDYYNQGRRAKKSAGAKLRHHFCPTHLRDLPPGARVNSEPHAFLKVDALGRVPFSSIRRPRPLLEVEPPNSSDGG NNEHAISVKPLEQEPLLAARVTIEDGLCLLLDVDDIDRLLEFNPLPDGELAHLRQRRQALLEGLATSLQLVDPLGKNGQTVGLAAEDDIVFLRVASLPKG RKLLSRYLQLLFPAGDLLRIVCMAIFRHLRFLFGVTPSDARAAETIDHLARTVSFCVRRMDLGSLSACLAAVVCSSEQPPLRPLSSSAGNGASVIVGSVL ERASEMLTEVHDASNYGVANRALWNASFDEFFGLLIKYCLNKYDGIMQSPGLDPAEAIKRELPMELLRASVPHTNDYQKKMMYDLSQRSLAGQDKGNGSL GV

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79090			unknown protein		Lus10031210 [exp]	0	1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Lus10042137 [exp]	2.8	0.9211
AT4G32620			Enhancer of polycomb-like tran...		Lus10041252 [exp]	4.5	0.9137
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10032516 [exp]	5.0	0.8983
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10014548 [exp]	8.5	0.9050
AT4G32620			Enhancer of polycomb-like tran...		Lus10021959 [exp]	10.2	0.9131
AT4G37100			Pyridoxal phosphate (PLP)-depe...		Lus10000751 [exp]	11.7	0.8295
AT5G53150			DNAJ heat shock N-terminal dom...		Lus10008983 [exp]	12.0	0.8741
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Lus10025531 [exp]	12.8	0.8575
AT4G26450		WIP1	unknown protein		Lus10027096 [exp]	13.8	0.8738
AT3G02890			RING/FYVE/PHD zinc finger supe...		Lus10020350 [exp]	14.1	0.8650

Compare expression of checked genes

Lus10031210 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.