Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28540 498 / 5e-171 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 498 / 8e-171 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT1G09080 467 / 8e-159 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 370 / 6e-123 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT1G16030 372 / 5e-122 HSP70B heat shock protein 70B (.1) AT5G02490 364 / 4e-119 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G56410 363 / 4e-119 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 363 / 9e-119 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT3G09440 362 / 2e-118 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G37910 290 / 4e-90 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031208 [exp] 813 / 0 AT5G28540 386 / 1e-129 heat shock protein 70 (Hsp 70) family protein (.1) Lus10031112 [exp] 516 / 1e-179 AT5G28540 543 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017306 [exp] 507 / 3e-173 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10031114 [exp] 497 / 2e-172 AT5G28540 590 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10023043 [exp] 513 / 4e-168 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10003202 [exp] 463 / 1e-157 AT5G42020 1133 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10017022 [exp] 452 / 8e-153 AT5G42020 986 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Lus10021345 [exp] 441 / 1e-150 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10020977 [exp] 397 / 5e-132 AT5G28540 779 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G143600 [exp] 512 / 1e-176 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 511 / 3e-176 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 499 / 2e-171 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 470 / 5e-160 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.001G042700 [exp] 372 / 5e-122 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 369 / 4e-121 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 368 / 2e-120 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054000 [exp] 365 / 2e-119 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 365 / 2e-119 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 363 / 9e-119 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10031213 pacid=23150957 polypeptide=Lus10031213 locus=Lus10031213.g ID=Lus10031213.BGIv1.0 annot-version=v1.0 ATGGCTGACCCTAGAGGAGGAGGAGCACGCGGTCTCATCATCTTTGCGTTTCTATTATTAGATTGCATAACCATCACTCGGTCAAGAACCAGGATAAGAA CTGTGCTTGGAATACATCTCGGTGCAACTTATTCCTGTGTCAGTATACAAAATGCTGCTGGTTATGTCAATATCATAGCCAACGAGCAAGGGAGCCATAT CACCCCGTCCTGGGTTGCCTTCACCGACAACGAGAGATTGATCGGTGAGGCTGCAAAGAACCAGACGGCTGTGAACCCAGAAAGAACAATCTTTGATGTC AAGAGGCTTATGGGAAGAAAATTTGACGATGAAGAGGTCCAGAGGGCAATGGAACTTGTCCCATACAAGATTGTGAGCAACGAAAGTAAGCCATATATCG AGGTAAAGATCAACGATCGAGAGACCAAGCTGTTCAGCCCTGAAGAGATCACTGCACTTATTTTGTATAAGATGAAGCGAACATCCGAGACTTTCCTCAA CGCCAAGATCAAAGATGCCATGATTGCTGTTCCTGCCTACTTCAATGATGCCCAGAGACAGGCGACCAAGGATGCTGCTGTTATCGCTAGGCTTAATGTG GTTAACATCATCGACGAGCCTGTTGCTGCAGCGTTCGCCTATGATTTGCACAAGGAACGTAGCAAGAGAAACGTTCTGGTCTTTAATCTCGGCGGTCATA CTTTCGATGTCAGTATCGTGAGCATTGATATCAAATCGGCCGAGGTCCTTTCAACCATTGTGGACAGCCATTTGGGAGGTGTGGACTTTGATCAAAGAAT TATTGAGTACTTGATCAATTCCATCAAGAACAAGTACGGAAAGGACATCAGTAGCAACAGTACTTCTGTAGCTAATCTCATGAGGGAAGCTGAACGAGCC AAGATCGCTCTGAGCAGCCAGGATCAAGTCCGAGTTGAAATCGAATCATTTTCTGAAACACTGAGAAGAAGTCGGTTCGAGGAAATGAACGACGATCTGT TCAGGAAGATGGTATCCCATGTGGGAAGGGCCATGGAAGAGGCTGGGTTTGAGAATAAGAAGGAATTGATAGATGAGATTATACTAGTGGGTGGAAGTAG CAGAATCCCCAAGGTTGGACAGCTCCTCAGAGATTACTTCGGCGGCAAGGAACCCAACATTCGAGTGAACCCTGATGAAGCTGTTGCTTATGGTGCTGCG ATCCAGGGAGTGATTCTGAGACAGGCGAAAGAACCTTGGGGTATTTTTCTGATGGAGCCACTTACTGGCAAAGAAGACTTTGATATCTTGGATCGGGAGT TTGTCGAGGAGGACACTTGGGGTCCTTTTGTGATTCCGAGTTATCCAAATAATGATTTCCATTTCGTCATGTACGACTTGGATTTTCCTATTAGCCAAGA AGAGATTGATACCTTACGGGACAATGAGATAAAGGAGAGGGTTGATGCTCCTAACCGTCTGCAGACCTATGCGAAGAACCCGTGCAACCCGATACGAAAA GCTCTATGCAAGCGAGTTCCAAAGGAAGAATTATCGTCCACTTGA
AA sequence Show only first row Show all	>Lus10031213 pacid=23150957 polypeptide=Lus10031213 locus=Lus10031213.g ID=Lus10031213.BGIv1.0 annot-version=v1.0 MADPRGGGARGLIIFAFLLLDCITITRSRTRIRTVLGIHLGATYSCVSIQNAAGYVNIIANEQGSHITPSWVAFTDNERLIGEAAKNQTAVNPERTIFDV KRLMGRKFDDEEVQRAMELVPYKIVSNESKPYIEVKINDRETKLFSPEEITALILYKMKRTSETFLNAKIKDAMIAVPAYFNDAQRQATKDAAVIARLNV VNIIDEPVAAAFAYDLHKERSKRNVLVFNLGGHTFDVSIVSIDIKSAEVLSTIVDSHLGGVDFDQRIIEYLINSIKNKYGKDISSNSTSVANLMREAERA KIALSSQDQVRVEIESFSETLRRSRFEEMNDDLFRKMVSHVGRAMEEAGFENKKELIDEIILVGGSSRIPKVGQLLRDYFGGKEPNIRVNPDEAVAYGAA IQGVILRQAKEPWGIFLMEPLTGKEDFDILDREFVEEDTWGPFVIPSYPNNDFHFVMYDLDFPISQEEIDTLRDNEIKERVDAPNRLQTYAKNPCNPIRK ALCKRVPKEELSST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10031213 [exp]	0	1
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10012366 [exp]	11.6	0.9016
AT1G25530			Transmembrane amino acid trans...		Lus10034283 [exp]	20.2	0.9001
AT1G30900		VSR6, VSR3;3, B...	VACUOLAR SORTING RECEPTOR 3;3,...		Lus10006944 [exp]	22.4	0.8980
AT5G42710			unknown protein		Lus10010807 [exp]	31.1	0.8873
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Lus10030396 [exp]	31.1	0.8978
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Lus10023152 [exp]	35.4	0.8953
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Lus10023173 [exp]	35.5	0.8912
AT1G07230		NPC1	non-specific phospholipase C1 ...		Lus10040678 [exp]	38.7	0.8522
AT1G19630		CYP722A1	"cytochrome P450, family 722, ...		Lus10024272 [exp]	43.6	0.8854
AT2G38120		MAP1, WAV5, PIR...	WAVY ROOTS 5, MODIFIER OF ARF7...		Lus10028278 [exp]	47.0	0.8836

Compare expression of checked genes

Lus10031213 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.