Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79080 457 / 6e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 259 / 6e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 249 / 7e-75 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G62670 177 / 2e-48 RPF2 rna processing factor 2 (.1) AT1G63130 175 / 1e-47 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 169 / 2e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62910 169 / 3e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 168 / 5e-45 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 167 / 8e-45 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 167 / 2e-44 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031793 [exp] 759 / 0 AT1G79080 387 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031215 [exp] 528 / 0 AT1G79080 544 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031792 [exp] 526 / 0 AT1G79080 539 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031791 [exp] 375 / 4e-124 AT1G79080 406 / 5e-136 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031566 [exp] 173 / 3e-47 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014660 [exp] 164 / 6e-44 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 163 / 1e-43 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10012037 [exp] 157 / 7e-41 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014245 [exp] 154 / 4e-40 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G144300 [exp] 513 / 6e-178 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 497 / 2e-171 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 254 / 6e-77 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 234 / 1e-69 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 230 / 4e-68 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G046000 [exp] 181 / 3e-49 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G045000 [exp] 179 / 5e-49 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.016G025600 [exp] 173 / 1e-46 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G050240 [exp] 167 / 6e-45 AT1G12700 465 / 1e-155 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 167 / 7e-45 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10031216 pacid=23151162 polypeptide=Lus10031216 locus=Lus10031216.g ID=Lus10031216.BGIv1.0 annot-version=v1.0 ATGGCATCCAAGCTCTTCCCCTTCCACGCCCCCAATCCCCGATCCGCCTCCCTAAAAAACGGCTTCACCAACATCACAGCGTCCCCGCAGAACAACTCCG CCGTCGTCTCGACTTCTCTGCCGCCGCTCAATTGGAAGATATCATTTCCAAAAACCAGCAAAAAAATCGGGCCAAACGAGCGGTTCTACGAGATGAAATA CGCCATTGCCAGGGGGAATTATCCCGACGCCGACGAGGCAAAGCAGCTGATCTTCGATCTCTGCCAAGGACTCTACCTCAAGAAGGCTATCAGGGTGATG GAATGGCTGATCGAGTGGAGAATCGCTCCTCCGGATTTGCGCACTTGCAGTCACTTGGTGAACAGTCTTTCGACGAGCGGCTACGTCGGGGAAGCGATGC TGATAGTGGAGAAGATGGAAGAAGTTGGGTTTCCGACGAATTCGAATACTTACAATTGCATAATTCGAGGGCTTGCCATGGATGGTGGGAGCTTCGATGA CTGTTTGAAATTCACAAACAAGCTAGTGGAGATGGGGGTGTTGCCCAGTACGTTTACTCATTCATCTTTGCTCGAGATTGCTTGTAAAGAGAAGGGAGTT GATCATGCCGCGAAGCTTTTTGACGAGATTGTTGCACAAGGTTGGGAGCCTGGCTTGATAAGCTACAATGTTCTTGTTACCGGACTCTGCAACGAAGGTA GGCTGGATGATGCAGTTCGCTTGTTCCGGGAGCTGCCATCAAAAGGTATCGATCCGACCGTAGTTAGCTACAACATCTTACTGAAGAGCCTCTGCCATGA AGGCAAGTGGGAGGAAGCAAATGCATTGCTCGCCGAGATGAACGCTGAAGCGAAATCTCCATCCGTCGTCACATACAACATGCTGATAAGTTCCCTGGCA TTCCACGGTAAGACTGAGGACGCGATTCGACTGTTCCGCGAGATGGAGAGAGGTAAATTCAAGCGCAAGCTCACCACGCCAGCTTACGACCCGATCATAG CTTGCCTTGCCAAACAAGGTAAGGCTGATATGATCATCGAGTTTCTAGATCATATGATATCCCGAAACATAGCTCCGAAAGATGGAACGTACGCTTCGGT CAGCTTGCTGACCGATGCAGGGAAGGTCCAGGAAGCGTATTCGATTATCCGAAGCTTGGCCTCGACAAAGAAGTGCTCAATTCACAACTTCTGGTATTAC GTGCTTTGCTGCCTGTGCGAGAAGGGAAGGACGTATGCTGCGTTCCAGCTTCTTTACGAGATGGTTAAGGACGATATGTTCGTGCCTGATCCACCGGCGT ATTCGACATTGATGAAAGGGCTGTATGTCGAAGGGATGCTGAGCGTAGCATTGGAGATCTTTGGGGCGCTGGTGAAAGAGTATGGATATGTTCCCAAGCC AGGGAACTTCAACACTCTTATGCTCGGGCTATGCAAGGCCGGGAGAACCGATCTGTCGTTGGAGGTTTTCGAGGATATGATCGGGAAGGGAATTCGGGCT AACGACTCGACTTATAACATTTTAGTACAAGGGATTGTGAATGAAGGTGGGAAGGAATTGGCAGGTGAAGTAGTGAAGGATTTGTTTCAGATCGGGGCAT TGAGTCGTGATGTTGTCCGGAGGTTTTCGCTGCGTTATGACCTGGATGTGTAA
AA sequence Show only first row Show all	>Lus10031216 pacid=23151162 polypeptide=Lus10031216 locus=Lus10031216.g ID=Lus10031216.BGIv1.0 annot-version=v1.0 MASKLFPFHAPNPRSASLKNGFTNITASPQNNSAVVSTSLPPLNWKISFPKTSKKIGPNERFYEMKYAIARGNYPDADEAKQLIFDLCQGLYLKKAIRVM EWLIEWRIAPPDLRTCSHLVNSLSTSGYVGEAMLIVEKMEEVGFPTNSNTYNCIIRGLAMDGGSFDDCLKFTNKLVEMGVLPSTFTHSSLLEIACKEKGV DHAAKLFDEIVAQGWEPGLISYNVLVTGLCNEGRLDDAVRLFRELPSKGIDPTVVSYNILLKSLCHEGKWEEANALLAEMNAEAKSPSVVTYNMLISSLA FHGKTEDAIRLFREMERGKFKRKLTTPAYDPIIACLAKQGKADMIIEFLDHMISRNIAPKDGTYASVSLLTDAGKVQEAYSIIRSLASTKKCSIHNFWYY VLCCLCEKGRTYAAFQLLYEMVKDDMFVPDPPAYSTLMKGLYVEGMLSVALEIFGALVKEYGYVPKPGNFNTLMLGLCKAGRTDLSLEVFEDMIGKGIRA NDSTYNILVQGIVNEGGKELAGEVVKDLFQIGALSRDVVRRFSLRYDLDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031216 [exp]	0	1
AT1G79080			Pentatricopeptide repeat (PPR)...		Lus10031793 [exp]	1.7	0.9080
AT5G42310			Pentatricopeptide repeat (PPR-...		Lus10012268 [exp]	1.7	0.9313
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Lus10025886 [exp]	6.9	0.8674
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10017156 [exp]	7.4	0.8943
AT3G04760			Pentatricopeptide repeat (PPR-...		Lus10000554 [exp]	8.5	0.9002
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Lus10021346 [exp]	9.9	0.9085
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Lus10043375 [exp]	14.2	0.8415
AT5G24300		SSI1, SSI, ATSS...	STARCH SYNTHASE 1, Glycogen/st...		Lus10018116 [exp]	14.6	0.8452
AT2G29180			unknown protein		Lus10016512 [exp]	15.5	0.8825
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10014555 [exp]	17.0	0.8613

Compare expression of checked genes

Lus10031216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.