Plant FIBer expression Database

Lus10031217 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G79070 115 / 4e-33 SNARE-associated protein-related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031794
[exp]
241 / 4e-82 AT1G79070 122 / 2e-36 SNARE-associated protein-related (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G144400
[exp]
137 / 1e-41 AT1G79070 133 / 6e-41 SNARE-associated protein-related (.1)
Potri.008G043200
[exp]
131 / 2e-39 AT1G79070 134 / 1e-41 SNARE-associated protein-related (.1)
PFAM info
Representative CDS sequence
>Lus10031217 pacid=23151033 polypeptide=Lus10031217 locus=Lus10031217.g ID=Lus10031217.BGIv1.0 annot-version=v1.0
ATGGAGAATCCTCCGGCCATCGCCGATTCCAACGAGGAAAGCAACGGCGTCGCCACAACGGAAGCGACGAATTCAACTCCGATACCAGAAAGCCCCGACG
TCGAGCTCGAGAAGAGCAGCAGTACAAGTAGTACCGACACACTTTCCAAGGCGCTATCGACGATCCTCTCGAATGTGATACGGGACTTCGATTCCGAAGC
TCAGAACACGCTCAAAAGCCAAGATCAGCTGAACTCCGCCCTCGATCGCCTCACCGGAGAGCTTGACGGACTGTTGGCAGATGCGCCGCTTCCGTTCATA
ATGCAGCACGCCGCGAAGATAACCGCCGTTAGGAAGAGAGTCTCGTCGTTGAACTCCGTGCTGAAATCGATACAGCGGCGCATTGATAACATGGACCGTG
TGATTTCCGTTGGCACGGCGCAACAAGGCATTAAGGTTCATCTTTTGTTACAGGAACGGAAAGAACCATCTGACAGTGTATATATTCAACATGCTGGGAT
CACCAATCTCGGAAGAGACGGGAAGATCCAGGTTGGCTCAGCTCAGTTCTGGATGAGAATGCCTTGCTCGGTCGGAACCATTCCGTCCTGA
AA sequence
>Lus10031217 pacid=23151033 polypeptide=Lus10031217 locus=Lus10031217.g ID=Lus10031217.BGIv1.0 annot-version=v1.0
MENPPAIADSNEESNGVATTEATNSTPIPESPDVELEKSSSTSSTDTLSKALSTILSNVIRDFDSEAQNTLKSQDQLNSALDRLTGELDGLLADAPLPFI
MQHAAKITAVRKRVSSLNSVLKSIQRRIDNMDRVISVGTAQQGIKVHLLLQERKEPSDSVYIQHAGITNLGRDGKIQVGSAQFWMRMPCSVGTIPS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G79070 SNARE-associated protein-relat... Lus10031217
[exp]
0 1
AT1G58100 TCP TCP8 TCP domain protein 8, TCP fami... Lus10019949
[exp]
4.4 0.7735
AT4G18040 LSP1, CUM1, AT.... eukaryotic translation Initiat... Lus10011988
[exp]
9.8 0.6652
AT2G38910 CPK20 calcium-dependent protein kina... Lus10029346
[exp]
15.0 0.7616
AT3G61650 TUBG1 gamma-tubulin (.1) Lus10010985
[exp]
27.2 0.7016
AT5G03500 Mediator complex, subunit Med7... Lus10016217
[exp]
45.8 0.7009
AT1G80100 AHP6 histidine phosphotransfer prot... Lus10011487
[exp]
46.8 0.6854
AT5G25620 YUC6 YUCCA6, Flavin-binding monooxy... Lus10034908
[exp]
47.4 0.7179
AT4G00830 LIF2 LHP1-Interacting Factor 2, RNA... Lus10030207
[exp]
50.9 0.6755
Lus10042085
[exp]
55.7 0.6835
AT5G02260 ATHEXPALPHA1.10... expansin A9 (.1) Lus10033801
[exp]
57.9 0.6727

Lus10031217 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.