Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79060 186 / 2e-54 unknown protein AT3G12970 155 / 8e-43 unknown protein AT1G56020 112 / 3e-27 unknown protein AT3G05980 47 / 1e-05 unknown protein AT5G19340 42 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031795 [exp] 498 / 2e-175 AT1G79060 253 / 3e-80 unknown protein Lus10019867 [exp] 42 / 0.0001 AT3G19200 89 / 3e-23 unknown protein Lus10009349 [exp] 42 / 0.0004 AT5G66800 113 / 5e-32 unknown protein Lus10014046 [exp] 40 / 0.0009 AT3G19200 89 / 8e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G098300 [exp] 251 / 2e-78 AT3G12970 162 / 3e-45 unknown protein Potri.007G065200 [exp] 246 / 6e-77 AT1G79060 119 / 1e-29 unknown protein Potri.007G042600 [exp] 45 / 2e-05 AT5G66800 121 / 4e-35 unknown protein Potri.009G102800 [exp] 42 / 0.0003 AT4G34419 95 / 2e-25 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031218 pacid=23150993 polypeptide=Lus10031218 locus=Lus10031218.g ID=Lus10031218.BGIv1.0 annot-version=v1.0 ATGGCTTCAGCCTGCGTCAACAACATCAGCATGTCGCCGGAGCGCTTCCCTTCCGGCGGCGGTAAATACTCCTCCTACGGCTGGCTCAGCCCCCGCATTT CCTTCAGCCGCGACGACAGCCCCAAGCAACAACCTCCCCCGCCGCCGCCGCCGGCGGAAGTGCAAGATCTCCCCTACTTCGAGTTCCGCCTCGACGATCC CGTCGGCATGCTCCCGGCGGACGAGCTCTTCTCCGACGGTAAACTCGTTCCAACGCAGCTGACGAGCTTGAAGCCGTTACCGGCGACGGAGACGGCGGCA GAGGAGGGGGAGAAATCCGGCCGGAGGATGGAAGTATCTGGGAACAGTACTGATAATACAATAACTGACCAGTACTTGTTCTCTCCCAAGGCGCCTCGAT GTTCGAGCCGGTGGAAAGAGCTGCTCGGCTTGAGGAAGTTTTACCATAATACCCCCAGCAAGGCGGCAGCGGGAGGAGGAGAAAGTCTCAGAACAGCGCC GTTCCTGTCGTCTTCTTCGAGTTCGAATAATCAGCAGCAGAGATCACTGATGAGGCATTTTCTACACAGGAATTCCAAATCCTGCAGCAGCTGCCATTCC TCCTCGCTAGACAGCTCGCTCAGCTTGCCATTGCTGAAGGATCTCGACTGTGAGTCAGTTTCAATCTCTTCTTCCCGGCTATCTCTTTCGTCCTCGTCTT CAAGCCACGAGCACGAAGATCTACCGAGGCTATCACTCGATTCTGAGAAGCAGCCGAATCCCAATCTGAACATCAGCTTGAACTTCAACCCGCTGCAGAG TCCGAATCCGTTCGTCCTTAATCGGAATCCGGCCGGGAACAATAATCCGCCGAGGATGAGAATGGTGAAGCCGAGAGGAGGAGGTGACGTCGCCGGCGGC GACGGAGCAGCAAGCAGAGTGGGGAGGAGTCCGATGAAGAGATCCGCCGCAGAATCAGGTGGGGCGACGAGCAGGGGGGTTTCGGTGGACAGCCCGCGGC TGAATTCGTCAGGGAAGTTGATATTCGAGAGCTTGGAGAGGAGCTCCAGTAGTCCAAGTACCTTCAATGGTGGGCCAATGGCCAAGATCAAAGGAATGGA GAGGTCCTACTCAGCAAACGTCAGGGTCACTCCCGTTCTTAACGTGCCCGTTTGTTCCCTACGAGGCTCGTCCAAATCCGGGTCGGTTTTCGGGTTCTTC TCAGCATCCTCCGCGCCGCAGAAGCGCGACAACGGCGGAGGAGGCGTAGGAGGAGGGATCCACAGGCAACAAAGCTCCGGCGGAGGAAACAGCAGAGCCA ACAACACCAGACATCAAATTTCACCATCTTGTTAA
AA sequence Show only first row Show all	>Lus10031218 pacid=23150993 polypeptide=Lus10031218 locus=Lus10031218.g ID=Lus10031218.BGIv1.0 annot-version=v1.0 MASACVNNISMSPERFPSGGGKYSSYGWLSPRISFSRDDSPKQQPPPPPPPAEVQDLPYFEFRLDDPVGMLPADELFSDGKLVPTQLTSLKPLPATETAA EEGEKSGRRMEVSGNSTDNTITDQYLFSPKAPRCSSRWKELLGLRKFYHNTPSKAAAGGGESLRTAPFLSSSSSSNNQQQRSLMRHFLHRNSKSCSSCHS SSLDSSLSLPLLKDLDCESVSISSSRLSLSSSSSSHEHEDLPRLSLDSEKQPNPNLNISLNFNPLQSPNPFVLNRNPAGNNNPPRMRMVKPRGGGDVAGG DGAASRVGRSPMKRSAAESGGATSRGVSVDSPRLNSSGKLIFESLERSSSSPSTFNGGPMAKIKGMERSYSANVRVTPVLNVPVCSLRGSSKSGSVFGFF SASSAPQKRDNGGGGVGGGIHRQQSSGGGNSRANNTRHQISPSC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G79060			unknown protein		Lus10031218 [exp]	0	1
AT1G79060			unknown protein		Lus10031795 [exp]	1.4	0.9631
AT1G14900		HMGA	high mobility group A (.1)		Lus10004056 [exp]	4.0	0.9609
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014381 [exp]	4.9	0.9512
AT3G22680		RDM1	RNA-DIRECTED DNA METHYLATION 1...		Lus10039354 [exp]	5.8	0.9155
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10009533 [exp]	6.9	0.9469
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10014380 [exp]	7.1	0.9466
AT1G63470	AT-hook		AT hook motif DNA-binding fami...		Lus10008535 [exp]	7.9	0.9279
AT3G13560			O-Glycosyl hydrolases family 1...		Lus10039179 [exp]	8.0	0.9017
AT2G28790			Pathogenesis-related thaumatin...		Lus10004954 [exp]	8.7	0.8967
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Lus10020352 [exp]	8.8	0.9463

Compare expression of checked genes

Lus10031218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.