Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60110 99 / 2e-21 DNA-binding bromodomain-containing protein (.1) AT2G44430 96 / 2e-20 DNA-binding bromodomain-containing protein (.1) AT3G57980 92 / 4e-19 DNA-binding bromodomain-containing protein (.1) AT2G42150 74 / 1e-13 DNA-binding bromodomain-containing protein (.1) AT1G61215 56 / 6e-08 BRD4 bromodomain 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031796 [exp] 567 / 0 AT2G44430 234 / 5e-67 DNA-binding bromodomain-containing protein (.1) Lus10010335 [exp] 88 / 1e-17 AT2G44430 320 / 2e-100 DNA-binding bromodomain-containing protein (.1) Lus10021861 [exp] 69 / 4e-12 AT2G44430 147 / 6e-39 DNA-binding bromodomain-containing protein (.1) Lus10011227 [exp] 52 / 8e-07 AT1G61215 288 / 7e-93 bromodomain 4 (.1) Lus10018457 [exp] 51 / 2e-06 AT1G61215 288 / 6e-93 bromodomain 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G212500 [exp] 179 / 5e-48 AT3G60110 113 / 6e-26 DNA-binding bromodomain-containing protein (.1) Potri.T042048 [exp] 179 / 5e-48 AT3G60110 113 / 5e-26 DNA-binding bromodomain-containing protein (.1) Potri.001G013600 [exp] 162 / 4e-42 AT3G57980 127 / 2e-30 DNA-binding bromodomain-containing protein (.1) Potri.009G023100 [exp] 77 / 2e-14 AT2G44430 280 / 3e-85 DNA-binding bromodomain-containing protein (.1) Potri.001G229300 [exp] 75 / 7e-14 AT2G44430 301 / 4e-93 DNA-binding bromodomain-containing protein (.1) Potri.004G036900 [exp] 52 / 1e-06 AT1G61215 323 / 1e-105 bromodomain 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00439 [flax] [poplar] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Lus10031219 pacid=23151065 polypeptide=Lus10031219 locus=Lus10031219.g ID=Lus10031219.BGIv1.0 annot-version=v1.0 ATGGTCGACGAGCTCCGGCGGCTCCGCGTAGAGGAGCTCCGACGTGAGGTCCAACGGCGTGACCTGTCGATCGAGAGTCTCGAATTGAAGGTGAAGAGAT TGGAAGAGGAGAGGGAGAGGAGCTTGAAGGAGGACGAGGCAGAGGTAGATCTAGCCGGAGAGGGACGACGGCCATCAACCGCCGAGAAATCCGGCGGCGG ATACGATTCGGCCGATGACCGGGAGAATGGATCGTTCAACGAATCCAATTCAACGAGTCAGCAACAGAAAGCTGGAACGACGACGTTGGAGGAGGAGGCG GATATAAAACCCGAAACGGATTCGAGAAACGGATCGGATCCGGGGCGGGACCATTCCGACCCGTCAGGAGAGCGGATCAGCTCGTACAACTATAATTTGG ACGATAAACGAGACGAGAAATGTCCAGCCGGAGAGAAGAATAACGAATTGGGCGGCGAATCGGTGGGGGAGTCGAAGCGGGAAGAGACGAAGGAGAAGGA GAAACAGAGCAGTGACGTGCAGAGTTCTGTCAGCTTGAAGAAGAAAGGGCGTCGTAGAGTTGGCAGCAGCGGCGGGGCTACGGCGGCGGGAGTTGCCGCA AGTAGCAGCGGCGAAGACCCCGAGGGTGGTGACGAGGTTTCTCCCGCCAGGAAGCGGGTTGCCGCTGTGAAATCCGAACCGTTGGTTAGAATCCTCGAGA TTATCCGGTCTCATCGGCTCGGCTCCGTTTTCGAACGGCGGCTCCGAAGCCAGGAATCGGAGAGATACAAAAGCTTGATCCGGCAGCACATCGACCTTCG GACGGTCCAACTCCGGCTCGACAAAGGAGTGTACCTAAGCTGCATCCCCAAATTCTACAGAGACCTCTTACTCCTATTCAACAACGCCATCCTCTTCTTC CGGGAGAGCTCGCCGGAGAACAATGCAGCTCGTGAACTCCGATCACTGGTCCTCAGGAACATGAAAGACAAGCTCCGAAAGCCTCCACCTCCTTCTTCAT CTAGTAAGCCTCAACCTCAATCGAAACCGCCGCCTACGCTGCCACCGGCTAACCAGAACGTGAAGCTTGAGGCGGCAGCTTCACAGAAGAAAACGAGTAC TTCAAATTCGAAACCTGACAAGTCTTCCTCAACTCTCGTTTCCTGCGGGAAGCGCAGCGTCTCGTTAAAAGCAGCAGCCTCGTCGGAGAAGCAGCAGCAG CTGCCGTCGTCCATTAAACTTGTAAATAACAGCAAGCAGAAACAGAGAGCTTCGGCGGAAGAGAAAGAGAAGGAGAAGCCGATGGTGAACAGTAAAAAGG CTGAATTGGCTTCTTCTTCAGTTCGGAAGGTCGAAGAAAAGGAAAAGCAAGATGAAGAAGAAGAAGAGGAGATCAAGGGTGTTCGTAAGGCGAGGACGAC GGTGACAAATACGAAGGAGAGGACGACCGGAGTAAAAGGCCGAAGAAATGCAAGGGTGGCGGTCACCACGACGGTGACGGGGAACAAGAATGGTGGAGGA GAAGGTAGTAATAAGCACAAGTACGGCGGAAATGAGTTGAGCTCCCACGACGCTCTAGATTCGAAAGCGAAGAGGAAAGAGCCGGCTGCAACGGTGAGGA AGAAGAGAGGGGCGGCGAGCTTTTTGAAGAGGATGAAGCAGAACAGCGATGCGACAAACGATAATAACGACGACAATGATGGATCATCCTCGTCGTCTTC GGTGTCTTCGGAGGACGACGACAAGAAGACGAAGGAAGAGAAAGGGAAGGAGAAGAAGGGTAGCAAGGTGGTCCGACGAGTTTCAAACAAAGATGTAGCA AGAGAGCGGCCGATCACGAGGAGCTCGAGAGGTAGAGGGAGAGGAGAGAGTGGGAAATGGAGGAGAGGCGGCGGACGGGGGGGGAGGAAGGGAGACGGTG GAGGAAGAGGTAGTAGTGCGGTGACTCCGGCGGAGCCATCAGGGAAGAGAGGAAGAGATGGCGAGGGTGGCGGGATCGGTGACGGTGGGAGTGGAGGAAG GGCTAGGAAGAGGGTCAGGAGGTGA
AA sequence Show only first row Show all	>Lus10031219 pacid=23151065 polypeptide=Lus10031219 locus=Lus10031219.g ID=Lus10031219.BGIv1.0 annot-version=v1.0 MVDELRRLRVEELRREVQRRDLSIESLELKVKRLEEERERSLKEDEAEVDLAGEGRRPSTAEKSGGGYDSADDRENGSFNESNSTSQQQKAGTTTLEEEA DIKPETDSRNGSDPGRDHSDPSGERISSYNYNLDDKRDEKCPAGEKNNELGGESVGESKREETKEKEKQSSDVQSSVSLKKKGRRRVGSSGGATAAGVAA SSSGEDPEGGDEVSPARKRVAAVKSEPLVRILEIIRSHRLGSVFERRLRSQESERYKSLIRQHIDLRTVQLRLDKGVYLSCIPKFYRDLLLLFNNAILFF RESSPENNAARELRSLVLRNMKDKLRKPPPPSSSSKPQPQSKPPPTLPPANQNVKLEAAASQKKTSTSNSKPDKSSSTLVSCGKRSVSLKAAASSEKQQQ LPSSIKLVNNSKQKQRASAEEKEKEKPMVNSKKAELASSSVRKVEEKEKQDEEEEEEIKGVRKARTTVTNTKERTTGVKGRRNARVAVTTTVTGNKNGGG EGSNKHKYGGNELSSHDALDSKAKRKEPAATVRKKRGAASFLKRMKQNSDATNDNNDDNDGSSSSSSVSSEDDDKKTKEEKGKEKKGSKVVRRVSNKDVA RERPITRSSRGRGRGESGKWRRGGGRGGRKGDGGGRGSSAVTPAEPSGKRGRDGEGGGIGDGGSGGRARKRVRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57980			DNA-binding bromodomain-contai...		Lus10031219 [exp]	0	1
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10029344 [exp]	6.9	0.8998
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10010786 [exp]	12.2	0.9049
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	13.7	0.8857
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Lus10004146 [exp]	20.1	0.9011
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020678 [exp]	20.2	0.8795
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10029867 [exp]	20.2	0.8529
AT5G08680			ATP synthase alpha/beta family...		Lus10034631 [exp]	21.8	0.9001
AT5G47030			ATPase, F1 complex, delta/epsi...		Lus10001082 [exp]	22.0	0.8967
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	24.4	0.8973
AT1G59900		AT-E1 ALPHA, AT...	pyruvate dehydrogenase complex...		Lus10013295 [exp]	27.1	0.8800

Compare expression of checked genes

Lus10031219 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.