Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19630 306 / 3e-106 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031797 [exp] 421 / 9e-152 AT5G19630 325 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10021039 [exp] 245 / 5e-82 AT5G19630 267 / 5e-91 alpha/beta-Hydrolases superfamily protein (.1) Lus10004187 [exp] 211 / 6e-69 AT5G19630 230 / 8e-77 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T056064 [exp] 342 / 1e-120 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.003G212400 [exp] 342 / 1e-120 AT5G19630 293 / 3e-101 alpha/beta-Hydrolases superfamily protein (.1) Potri.001G013700 [exp] 342 / 2e-120 AT5G19630 324 / 9e-114 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G191700 [exp] 66 / 5e-13 AT5G19630 77 / 2e-17 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF02129 [flax] [poplar] Peptidase_S15 X-Pro dipeptidyl-peptidase (S15 family)
Representative CDS sequence Show only first row Show all	>Lus10031220 pacid=23151066 polypeptide=Lus10031220 locus=Lus10031220.g ID=Lus10031220.BGIv1.0 annot-version=v1.0 ATGTCGAACTACACAGTTGAGTCCACCACAGTGGAGCCAACCGACGGGGCAGCCAAGCTCCACACAAGGATCTTCAAACCCAAACAAGATGAAGATCATC CGCCAAGCTCCGTACTAGAAGACTTGGTGATTGTACTTGTTCACCCGTTCACTGTCATGGGAGGCTGCCAAGCTCTTCTCAAAGGGATGTCGATTGGATT AGCTCAGAAAGGGTTTAAAGCTGTGACCTTTGACATGAGAGGCGCCGGTAGATCCACAGGGAGGCCGTCGCTCACTGGATTTGCTGAAATCAAGGATGTG ATCTCCGTCTGCAAATGGGTTTCTGAGAATCTCTCCACCAAAAGGATTTTGTTGGTCGGTTCCTCAGCAGGTGCGCCGATCGCCGGTTCATCCGTCGATC AGATCAAGGAAGTCGTCGGCTACGTGAGCATAGGCTACCCTTTTGGAATGGTGGCCTCCGTGCTATTCGGGAGGCACCACAAGTCCATTCTACAGTCTCC GAAACCGAAGCTCTTCATCATGGGAACCCAGGACGGGTTCACGAGTGTCAAACAGCTCCAGAACAAGTTGAAATCGGCAGCTGGTCGTATCGAGACTCAT TATATCGAAGGCGCCAGCCATTTCCAAATGGAAGGTCCTGCATTTGACGCCCAGATGGCCGACCTCATTGCCTCGTTCGCAGCGTCTTTATGA
AA sequence Show only first row Show all	>Lus10031220 pacid=23151066 polypeptide=Lus10031220 locus=Lus10031220.g ID=Lus10031220.BGIv1.0 annot-version=v1.0 MSNYTVESTTVEPTDGAAKLHTRIFKPKQDEDHPPSSVLEDLVIVLVHPFTVMGGCQALLKGMSIGLAQKGFKAVTFDMRGAGRSTGRPSLTGFAEIKDV ISVCKWVSENLSTKRILLVGSSAGAPIAGSSVDQIKEVVGYVSIGYPFGMVASVLFGRHHKSILQSPKPKLFIMGTQDGFTSVKQLQNKLKSAAGRIETH YIEGASHFQMEGPAFDAQMADLIASFAASL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G19630			alpha/beta-Hydrolases superfam...		Lus10031220 [exp]	0	1
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Lus10031167 [exp]	2.2	0.9186
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10038356 [exp]	3.0	0.9095
AT2G42005			Transmembrane amino acid trans...		Lus10001390 [exp]	5.3	0.8956
AT3G55830		EPC1	ECTOPICALLY PARTING CELLS, Nuc...		Lus10027392 [exp]	5.5	0.8867
AT5G42090			Lung seven transmembrane recep...		Lus10033235 [exp]	5.5	0.9095
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	10.8	0.9054
AT5G18520			Lung seven transmembrane recep...		Lus10009065 [exp]	12.2	0.9011
AT1G05780			Vacuolar ATPase assembly integ...		Lus10033833 [exp]	14.0	0.8770
AT2G18840			Integral membrane Yip1 family ...		Lus10025478 [exp]	16.5	0.8900
AT1G48030		mtLPD1	mitochondrial lipoamide dehydr...		Lus10043103 [exp]	16.6	0.8774

Compare expression of checked genes

Lus10031220 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.