Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 421 / 3e-146 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 306 / 9e-101 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G12140 276 / 1e-89 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G06780 270 / 2e-88 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT3G57970 56 / 2e-08 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT3G57960 49 / 1e-06 Emsy N Terminus (ENT) domain-containing protein (.1) AT5G20030 48 / 6e-06 Plant Tudor-like RNA-binding protein (.1) AT1G80810 46 / 5e-05 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G47690 45 / 7e-05 binding (.1.2.3) AT4G31880 42 / 0.0006 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031798 [exp] 754 / 0 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031223 [exp] 442 / 5e-154 AT5G13020 459 / 9e-161 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031799 [exp] 427 / 2e-148 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10004188 [exp] 295 / 5e-97 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 251 / 5e-81 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10000040 [exp] 120 / 9e-33 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10014715 [exp] 52 / 5e-07 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10003091 [exp] 50 / 1e-06 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10024835 [exp] 45 / 5e-05 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013800 [exp] 451 / 2e-157 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 439 / 1e-152 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 436 / 3e-151 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 399 / 3e-137 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 385 / 5e-132 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 293 / 1e-96 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.016G047600 [exp] 259 / 1e-83 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 50 / 1e-06 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.006G250600 [exp] 48 / 6e-06 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 48 / 1e-05 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Lus10031221 pacid=23150980 polypeptide=Lus10031221 locus=Lus10031221.g ID=Lus10031221.BGIv1.0 annot-version=v1.0 ATGTATGAACATTCTGATAGCAGTGGTACAGATGATGACCTGCCATCGCATCCAAATAGATTCCAGTCTGGTGTGCGAACCGCTGGGAACGGAAGACCTG CTCCCCTAGCGAGGATGCACAGTGATATGGAAGCTCAAATTCACACTATTGAGATAGAAGCATATAGCTCTGTTCTGCTCGCTTTTAAAGTCCAATCAGA TGCCATCACTTGGGAAAAAGGAAGCTTAATGACAAACCTTAGGAAAGAGTTGAGAGTGTCAAATGAAGAGCATAGAGAACTTCTGTCACGGCTCGATACT GATGATACCGTCCAAAGAATGAGGGAATGGAGAATGGTGAATGGGAATCAACCGGGCATGCAAAATTCTACTCAGCTTGCTCAGGATCATGTTCCTAATC CGTCCTTTTCTGGATCACGAAAGAAGCAGAAAGCATCAAAGCCGGCCCGTTCGTTATCCATAGGTGGTCTTCCTGCACTACACTCGCCAATGCAAGCATC TACCTCTGCCATAAGGCGAGGACCTCACCCTGCTTCTAGGAGCAAGAAGCTCCAGCCTTTCCCGTCTACAAACTGGAATGCTGGCAGGGGCCAAGTTGCT AACAGAGGATCTTTAGGTGCATTTCCGACCAATGAGCCTGCAACAGCTGCCAATTTTAATCCGTTGATCGGAAAGAAAGTTTGGACTCGGTGGCCTGAAG ATAATAATTTTTATGAGGCTGTGATCACCGACTACAATGCCACTAATGGGATGCATGTTTTGGTTTATGATATACACACTGCTGATGAAACATGGGAATG GGTTGATCTCAAAGAGATACCTCCTGGGGATATCAAATGGGAAGGCGACGAACCTTCCAATTCTCGTAAAGGTGGCCGCCCCGGACCTGGCAGGGAGAAT AAGAAGTCAGTGATGCGTGCTGGTCCCGGTGCTGGTGCTGCCGGAAGGGGTAGAGGGACGACGAAAGGCTCGAAAAAGGAGGTCCCGCCGCTATCACAGA ATGGCGCTGGTAAAAGGGCAGCGGGCGACATCGAGATACTTCATACTGATACTTTAATAAAGGAGGTCGAAAAGGTCTTTGGTGCCAACTTTCCCGACCC TATAGAGATTGAGAAAGCAAAGAAAGTGCTCGAAGATCATGAACATGCTCTCGTAGATGCAATTGCGAGACTCGAAGATGCTTCAGATGGTGAAAGTGGT AATACATAA
AA sequence Show only first row Show all	>Lus10031221 pacid=23150980 polypeptide=Lus10031221 locus=Lus10031221.g ID=Lus10031221.BGIv1.0 annot-version=v1.0 MYEHSDSSGTDDDLPSHPNRFQSGVRTAGNGRPAPLARMHSDMEAQIHTIEIEAYSSVLLAFKVQSDAITWEKGSLMTNLRKELRVSNEEHRELLSRLDT DDTVQRMREWRMVNGNQPGMQNSTQLAQDHVPNPSFSGSRKKQKASKPARSLSIGGLPALHSPMQASTSAIRRGPHPASRSKKLQPFPSTNWNAGRGQVA NRGSLGAFPTNEPATAANFNPLIGKKVWTRWPEDNNFYEAVITDYNATNGMHVLVYDIHTADETWEWVDLKEIPPGDIKWEGDEPSNSRKGGRPGPGREN KKSVMRAGPGAGAAGRGRGTTKGSKKEVPPLSQNGAGKRAAGDIEILHTDTLIKEVEKVFGANFPDPIEIEKAKKVLEDHEHALVDAIARLEDASDGESG NT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031221 [exp]	0	1
AT5G55600			agenet domain-containing prote...		Lus10016606 [exp]	2.4	0.8605
AT2G16090		ATARI2, ARI2, A...	ARABIDOPSIS ARIADNE 2, ARIADNE...		Lus10026319 [exp]	2.6	0.8665
AT5G55600			agenet domain-containing prote...		Lus10007115 [exp]	8.1	0.8643
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10011568 [exp]	8.2	0.8563
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	11.2	0.8458
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Lus10020229 [exp]	13.5	0.8382
AT1G78420			RING/U-box superfamily protein...		Lus10013709 [exp]	15.0	0.8101
AT3G14470			NB-ARC domain-containing disea...		Lus10039549 [exp]	18.3	0.8125
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	19.0	0.8398
AT4G26980			RNI-like superfamily protein (...		Lus10032638 [exp]	19.3	0.8387

Compare expression of checked genes

Lus10031221 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.