Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031222 pacid=23151156 polypeptide=Lus10031222 locus=Lus10031222.g ID=Lus10031222.BGIv1.0 annot-version=v1.0 ATGATATGTTGGATTCTGTGGAAGTTTGACTTTTCCTCTGCTAGGGTTTTCTCGGCCCCAGATTCTTTTGAAATTTTGAATTTCGTGGTGCTTTACTTGA GTGAAGCTAGAAGTTTGGAGATCTTTGCTGGTTCCAACTTGTGGGGAATTCAGCTGCTTCCTTCTGCTTTCGGTGGTGGTTCTGGGGTTTGGAACCTAAT TAAGGTAGAACTTGTTTCCATTTTGCTTATTAGATTGTTTCCTGGAAATATGCAGTTAACGCATAGTTTTGCTGTCTTCTGGCAGGTTCCCTGGAACTGT TTTGTTTCAGAGCTGCTGAGCTCATTGTAA
AA sequence Show only first row Show all	>Lus10031222 pacid=23151156 polypeptide=Lus10031222 locus=Lus10031222.g ID=Lus10031222.BGIv1.0 annot-version=v1.0 MICWILWKFDFSSARVFSAPDSFEILNFVVLYLSEARSLEIFAGSNLWGIQLLPSAFGGGSGVWNLIKVELVSILLIRLFPGNMQLTHSFAVFWQVPWNC FVSELLSSL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031222 [exp]	0	1
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Lus10038464 [exp]	3.5	0.7966
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	7.1	0.7501
AT3G48195			Phox (PX) domain-containing pr...		Lus10001233 [exp]	13.6	0.7685
AT3G23950			F-box family protein (.1)		Lus10007303 [exp]	15.7	0.7679
AT2G17020			F-box/RNI-like superfamily pro...		Lus10025094 [exp]	29.0	0.7468
AT5G06560			Protein of unknown function, D...		Lus10015990 [exp]	36.3	0.7176
AT4G19110			Protein kinase superfamily pro...		Lus10005183 [exp]	38.2	0.7152
AT3G13670			Protein kinase family protein ...		Lus10039203 [exp]	44.9	0.7083
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10020551 [exp]	45.5	0.6831
AT1G48170			unknown protein		Lus10022783 [exp]	45.7	0.6843

Compare expression of checked genes

Lus10031222 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.