Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13020 411 / 8e-142 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 305 / 9e-100 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G12140 283 / 1e-92 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G06780 264 / 3e-85 AtEML2, ACK4 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) AT3G57970 52 / 3e-07 Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT5G20030 50 / 2e-06 Plant Tudor-like RNA-binding protein (.1) AT5G47690 47 / 2e-05 binding (.1.2.3) AT3G57960 44 / 0.0001 Emsy N Terminus (ENT) domain-containing protein (.1) AT1G80810 42 / 0.0008 Tudor/PWWP/MBT superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031799 [exp] 735 / 0 AT5G13020 417 / 1e-144 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031221 [exp] 442 / 1e-153 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10031798 [exp] 436 / 2e-151 AT5G13020 434 / 1e-151 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10004188 [exp] 312 / 4e-103 AT5G13020 321 / 2e-107 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10021038 [exp] 273 / 8e-89 AT5G06780 290 / 3e-97 EMSY-like 2, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2) Lus10000040 [exp] 147 / 9e-43 AT5G13020 149 / 6e-45 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Lus10014715 [exp] 50 / 2e-06 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10003091 [exp] 49 / 5e-06 AT5G20030 112 / 6e-28 Plant Tudor-like RNA-binding protein (.1) Lus10018332 [exp] 48 / 1e-05 AT4G31880 464 / 2e-149 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G013800 [exp] 494 / 2e-173 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 488 / 5e-171 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 485 / 4e-170 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 390 / 6e-133 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G229000 [exp] 380 / 5e-129 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.016G047600 [exp] 333 / 6e-112 AT5G13020 353 / 3e-120 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.006G191400 [exp] 319 / 5e-106 AT5G13020 332 / 5e-112 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.005G216200 [exp] 52 / 3e-07 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.018G030500 [exp] 52 / 6e-07 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.002G046800 [exp] 50 / 2e-06 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain
Representative CDS sequence Show only first row Show all	>Lus10031223 pacid=23151114 polypeptide=Lus10031223 locus=Lus10031223.g ID=Lus10031223.BGIv1.0 annot-version=v1.0 ATGGACTATGATAGCAGTGATACAGACGATGACGTCCCTCCACAACTACAAAATAGATTCCGAAGTGGAATGCGACCTGCTGGGAATGGAAGAACTGCAG TGGCTACCTCCGCTCCCATGCCAAGGATAAGTGATATGGAAATTCAAATTCACAATATTGAACAAGAAGCATATAGATATGTGCTGCGGGCATTCAAAGC TCAATCAGATGCTATTACCTGGGAAAAAGAAGGCTTAATAACAGAACTCAGAAAGGAGTTGAGAGTGTCAGACGAGGAGCATAGGGAACACTTATCCAGG GTTAACAATGACGACATGATTCGGAGGATAAGGGAATGGAGAAAGACTAGTGGATCTCAATCAGGCATGCCAAACAACGCCCAGCCTGGCCATGATCGTG CGCCTAGTCCCTCTGTTTCAGCATCCCGCAAGAAGCAGAAAACCTCACAGTCGGTTGCTTCGTTACCATCCATGGGTGCCCCTTCTCCTACACCGCACCC ACCCATGCAAGCATCTACATCAGCCCTGAGGCGTGGACCTCTACCTCCCTCTGCATCTAGGAAGAAGCCCCAGCCATCCTTGCAGTACCCTTCTACAGGT TTGCCTGAAACTGGAAGGGGCCAAGTTGCTAATAGAGCTTCCTCGGGTCAGTTTGCAACCCATGAGGCTGCTGCACCTGCCACTTTCGATCCATTGATTG GAAGAAAAGTTTGGACCCGATGGCCGGAAGATAATAACTTCTACGAGGCTCTCATCACAGACTACAAGGCAGACGAAGGAAGACATGCTTTGGTTTACGA TATGAACACTCGGGAGGAAACATGGGAATGGGTCGATCTGAAAGAGATACCTGCAGAGGACATCAAATGGGAAGGTGACGATCCTACCCATTTTAGTAAA AGTGGCCGGCCTGGACCTGGTCCTGGTCGGGGCAATAAGAAGCCCTTGATGCGTGGTGGTTCCGTTGCTGCTGGGGCTGGACGTGGAAGAGGGAACCCAA AGGGTCCAAAGAGGGATTTCCCTCTATCACAGAACGGAACTGGTAAAAAAACCTTAGGTGACATTGAGATCCTTCACACGGAGACTCTAATCAAGGAGGT GGAAAAAGTTTTTGGTGCTAGCCTTCCTGACCCGATGGAAATTGAGAAAGCTAAGAAAGTGCTCAAAGAACATGAACAAGCTCTCGTCGATGCAATTTCA AGGCTGGAAGATGCTTCAGATGGTATGAGGGAGGGGGGCAGTTTTCCAGGGGGAGGTCAATGGATCAAGAACAAAGTTGGAGGAAAGAGATACAGTGAAC TTGGTGGAGAAAGTAGAGGTCCAGATGGTCAGGGAGGATAG
AA sequence Show only first row Show all	>Lus10031223 pacid=23151114 polypeptide=Lus10031223 locus=Lus10031223.g ID=Lus10031223.BGIv1.0 annot-version=v1.0 MDYDSSDTDDDVPPQLQNRFRSGMRPAGNGRTAVATSAPMPRISDMEIQIHNIEQEAYRYVLRAFKAQSDAITWEKEGLITELRKELRVSDEEHREHLSR VNNDDMIRRIREWRKTSGSQSGMPNNAQPGHDRAPSPSVSASRKKQKTSQSVASLPSMGAPSPTPHPPMQASTSALRRGPLPPSASRKKPQPSLQYPSTG LPETGRGQVANRASSGQFATHEAAAPATFDPLIGRKVWTRWPEDNNFYEALITDYKADEGRHALVYDMNTREETWEWVDLKEIPAEDIKWEGDDPTHFSK SGRPGPGPGRGNKKPLMRGGSVAAGAGRGRGNPKGPKRDFPLSQNGTGKKTLGDIEILHTETLIKEVEKVFGASLPDPMEIEKAKKVLKEHEQALVDAIS RLEDASDGMREGGSFPGGGQWIKNKVGGKRYSELGGESRGPDGQGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031223 [exp]	0	1
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10031799 [exp]	1.0	0.8995
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	1.4	0.8734
AT1G79020			Enhancer of polycomb-like tran...		Lus10033318 [exp]	1.7	0.8393
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Lus10040921 [exp]	2.8	0.8194
AT5G18420			unknown protein		Lus10027578 [exp]	5.5	0.7838
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032871 [exp]	6.3	0.8147
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10019873 [exp]	8.8	0.7931
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Lus10005143 [exp]	11.1	0.7351
AT2G45140		PVA12	plant VAP homolog 12 (.1)		Lus10015885 [exp]	15.5	0.7507
AT3G32940			RNA-binding KH domain-containi...		Lus10013751 [exp]	17.7	0.7885

Compare expression of checked genes

Lus10031223 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.