Plant FIBer expression Database

Lus10031224 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G13030 968 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031800
[exp]
1281 / 0 AT5G13030 962 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G013900
[exp]
1026 / 0 AT5G13030 989 / 0.0 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02696 UPF0061 Uncharacterized ACR, YdiU/UPF0061 family
Representative CDS sequence
>Lus10031224 pacid=23151026 polypeptide=Lus10031224 locus=Lus10031224.g ID=Lus10031224.BGIv1.0 annot-version=v1.0
ATGATCGAGGCAACGACACGTCGTTCGTTCCCCGTATCTCAATGGCGAAAAAACAAAAAGGTCACCGCTCGTGTTTTTATAATCGACAACGGCAAAATGA
TGCTGCTGCTTTCTCATTTCTCTCCGAAGTCTCCGCTCGTACTCCGTTCTCTCCCCCGCCCCAAATTCCCATTCTACCCTCTCTCTTCTCCGAAATCCCA
ACTCTATCCTCCCCCGCCTCGCTCACCCTTCGCATGCCACGTTAGCTCCTCCTCCATGGACTCCGCCGCCGCGCCGTTGTCCGTCGACTCCTTGACGGAC
GATCTCAAGAACCAGAGCTTACAAGGGAAGGATTGTCAGACAGAGAGTAATACTACTACTAAGTTGAAGCTCGAAGATCTGAATTGGGACCATTCGTTCG
TCAATGAACTGCCCGGCGATCCGAGGACCGATCGACTTCCTCGTCAGGTTTTGCACGCTTGCTACACGAAAGTTAGCCCTTCAGCAGAAGTAGAAAATCC
GCAACTCGTTGCCTGGTCAGACTCAGTTGCGCGGCTGCTTGATTTGGACTTTGAAGAATTTGAAAGGCCAGATTTCCCTCTTTTTCTTTCAGGGGCATCT
CCTTTAGCTGGATCGGTACCCTTTGCTCAGAACTATGGGGGGCATCAGTTTGGAACCTGGGCAGGCCAATTAGGCGACGGTCGGGCAATATCTCTAGGGG
AGATTCTGAATTCCAGAGGTGAACGATGGGAATTGCAGCTGAAGGGTGCCGGAAAGACTCCGTACAGCCGCTTTGCCGATGGCCTTGCAGTGTTGCGCAG
TAGCGTCCGGGAGTTCCTTTGTAGTGAAGCAATGCACCACTTGGGTATCCCGAGTACTCGTGCACTTTCTCTTGTAACAACTGGGAAATTGGTTACTAGG
GATATGTTTTACGATGGAAATGCGAAGGAGGAACCTGGGGCGATTGTTTGTAGAGTAGCTCCGTCATTTCTTCGATTTGGTTCATACCAACTGCATGCTT
CCAGAGGAAAAGAGGACCTCGAAATTGTCCGGGCTTTGGCGGACTATGCTATAAAGCATCATTTCCCTCACATTGAGAATATGGATAGAAGTGAGACCTT
GTCCTTTACTACAGGAGAAGATGAAGATTCCGTCGTTGATCTTACCTCAAATAAATATGCAGCATGGATGGTGGAGATAGCGGAACGTACTGCTTATGTG
GCTGCCAGATGGCAGGGGGTCGGTTTTACTCACGGAGTGCTCAACACCGACAATATGAGCATACTCGGTCTCACAATCGATTATGGTCCCTTTGGGTTCT
TGGATGCTTTTGATCCAAGTTTCACTCCAAATACAACTGATTTACCTGGGAGAAGGTACTGTTTCGCTAATCAACCCGATATTGGCCTATGGAACATCGC
TCAGTTCGGAGCTACTCTAACTGCTGCTGGTTTGGTTAGTGATAAGGAGGCAAATTATGCCATGGAAAGGTATGGCACCAAGTTCATGGACGAGTATCAA
GGTATAATGACGAAAAAACTTGGCCTCCCTAAATACAACAAGCAGTTGCTAGGTAAACTCCTGAACAACATGGCTGTGGATAAAGTCGATTACACCAATT
TCTTCCGTACGCTTTCGAACATCAAGGCGGATCCGAATATCCCGGAAGACGAACTATTAGTTCCGCTGAAAGCCGTCCTTTTGGATATTGGCAAGGAGCG
CAAAGAGGCATGGACTACCTGGGTTCAGACCTACATACAAGAGCTTGCTGCTAGTGGAACCCCGGACGAGGAGAGGAAGCCCCAGATGGATTCCGTAAAT
CCAAAATACATCCTCCGCAACTACTTATGCCAGATGGCGATCGATGCAGCCGAAGGTGGGGACTTCTCGGAGGTGAGAAGGCTGCTGAAGTTAGTAGAGC
GGCCGTACGACGAGCAGCCTGGAATGGAGAAGTATGCTCGGTTGCCACCGGCTTGGGCTTATCGGCCAGGGGTCTGCATGCTGTCTTGCTCTTCTTGA
AA sequence
>Lus10031224 pacid=23151026 polypeptide=Lus10031224 locus=Lus10031224.g ID=Lus10031224.BGIv1.0 annot-version=v1.0
MIEATTRRSFPVSQWRKNKKVTARVFIIDNGKMMLLLSHFSPKSPLVLRSLPRPKFPFYPLSSPKSQLYPPPPRSPFACHVSSSSMDSAAAPLSVDSLTD
DLKNQSLQGKDCQTESNTTTKLKLEDLNWDHSFVNELPGDPRTDRLPRQVLHACYTKVSPSAEVENPQLVAWSDSVARLLDLDFEEFERPDFPLFLSGAS
PLAGSVPFAQNYGGHQFGTWAGQLGDGRAISLGEILNSRGERWELQLKGAGKTPYSRFADGLAVLRSSVREFLCSEAMHHLGIPSTRALSLVTTGKLVTR
DMFYDGNAKEEPGAIVCRVAPSFLRFGSYQLHASRGKEDLEIVRALADYAIKHHFPHIENMDRSETLSFTTGEDEDSVVDLTSNKYAAWMVEIAERTAYV
AARWQGVGFTHGVLNTDNMSILGLTIDYGPFGFLDAFDPSFTPNTTDLPGRRYCFANQPDIGLWNIAQFGATLTAAGLVSDKEANYAMERYGTKFMDEYQ
GIMTKKLGLPKYNKQLLGKLLNNMAVDKVDYTNFFRTLSNIKADPNIPEDELLVPLKAVLLDIGKERKEAWTTWVQTYIQELAASGTPDEERKPQMDSVN
PKYILRNYLCQMAIDAAEGGDFSEVRRLLKLVERPYDEQPGMEKYARLPPAWAYRPGVCMLSCSS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G13030 unknown protein Lus10031224
[exp]
0 1
AT5G43630 TZP zinc knuckle (CCHC-type) famil... Lus10022216
[exp]
1.4 0.8411
AT2G40890 REF8, CYP98A3, ... cytochrome P450, family 98, su... Lus10020849
[exp]
3.5 0.7952
AT5G42270 FTSH5, VAR1 VARIEGATED 1, FtsH extracellul... Lus10016003
[exp]
4.2 0.8378
AT1G10830 Z-ISO1.2, Z-ISO... 15-cis-zeta-carotene isomerase... Lus10021965
[exp]
6.3 0.7864
AT5G01410 PDX1, ATPDX1.3,... REDUCED SUGAR RESPONSE 4, ARAB... Lus10004812
[exp]
8.9 0.7911
AT2G40100 LHCB4.3 light harvesting complex photo... Lus10037836
[exp]
10.4 0.7857
AT5G50100 Putative thiol-disulphide oxid... Lus10004232
[exp]
10.4 0.8188
AT2G21340 MATE efflux family protein (.1... Lus10042074
[exp]
10.8 0.7644
AT4G16563 Eukaryotic aspartyl protease f... Lus10008513
[exp]
12.0 0.7562
AT5G04830 Nuclear transport factor 2 (NT... Lus10008971
[exp]
12.4 0.7906

Lus10031224 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.