Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04640 357 / 3e-126 LIP2 lipoyltransferase 2 (.1.2) AT4G31050 143 / 1e-41 Biotin/lipoate A/B protein ligase family (.1) AT1G47578 137 / 1e-39 Biotin/lipoate A/B protein ligase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031801 [exp] 454 / 1e-164 AT1G04640 355 / 2e-125 lipoyltransferase 2 (.1.2) Lus10025664 [exp] 136 / 2e-38 AT4G31050 346 / 8e-120 Biotin/lipoate A/B protein ligase family (.1) Lus10008181 [exp] 54 / 7e-09 AT4G31050 107 / 1e-28 Biotin/lipoate A/B protein ligase family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G014000 [exp] 369 / 9e-131 AT1G04640 388 / 2e-138 lipoyltransferase 2 (.1.2) Potri.002G131000 [exp] 132 / 3e-37 AT1G47578 360 / 6e-126 Biotin/lipoate A/B protein ligase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0040 [flax] [poplar] tRNA_synt_II PF03099 [flax] [poplar] BPL_LplA_LipB Biotin/lipoate A/B protein ligase family
Representative CDS sequence Show only first row Show all	>Lus10031225 pacid=23150966 polypeptide=Lus10031225 locus=Lus10031225.g ID=Lus10031225.BGIv1.0 annot-version=v1.0 ATGAGGTTGCCGCGGAGTCTACATGTCTGGAAGATGGGAACAGTCGACTACGTGGAATCACTGAAGCTGCAGGAGAAGTTGGTATCTGAAAGGAAAGCAC ACAAGATATCCCACACACTTCTGTGCTTGCAGCATCCTCCAACGTACACTGTAGGTAAACGAAGAACGGATCACAATCTGCTCATTTCCGAATCCGAACT AACAAGCTTAGGAGCTCAGCTTCACTACACTGAAAGAGGCGGAGACATTACGTACCATGGCCCTGGTCAGGCAGTTCTCTATCCCATTCTTTCCCTCCGT GAGATTGGACTTGGAGCTAGGAAGTACGTAGAGAAGCTTGAGCTCACCATGATCGAGCTGGCATCACTCTATGGAGTGAAGGCCTCTGCTGGCGGAGAAC AAGGGGAGACTGGAGTATGGGTTGGAGACGGCAAAATCGGCGCGATTGGAGTCCGTATCTCGAGCGGAATTACTTCTCACGGACTGGCTTTCAATATTAA CCCGGATTTGAATTACTTCAACCACATTGTGCCGTGTGGGATTGCGGATAAGAAAGTTACTTCGCTGAGGAAGGAGACAGGTATTGTGCTTCCTACTGAA GAAGTTGTTCATGATCAGTTGGTTTCGTGTTTTGCTGGAGTTTTTGGTTTTAGCAATCTTATCTGGGAGGAAAATGCTTCGTGTTCAAAGACCAAAGATT TATGA
AA sequence Show only first row Show all	>Lus10031225 pacid=23150966 polypeptide=Lus10031225 locus=Lus10031225.g ID=Lus10031225.BGIv1.0 annot-version=v1.0 MRLPRSLHVWKMGTVDYVESLKLQEKLVSERKAHKISHTLLCLQHPPTYTVGKRRTDHNLLISESELTSLGAQLHYTERGGDITYHGPGQAVLYPILSLR EIGLGARKYVEKLELTMIELASLYGVKASAGGEQGETGVWVGDGKIGAIGVRISSGITSHGLAFNINPDLNYFNHIVPCGIADKKVTSLRKETGIVLPTE EVVHDQLVSCFAGVFGFSNLIWEENASCSKTKDL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Lus10031225 [exp]	0	1
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020678 [exp]	11.2	0.8452
AT3G45770			Polyketide synthase, enoylredu...		Lus10020161 [exp]	15.3	0.7914
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10020679 [exp]	26.5	0.8300
AT5G14600			S-adenosyl-L-methionine-depend...		Lus10032134 [exp]	40.0	0.7410
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10003546 [exp]	82.5	0.7663
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10038681 [exp]	107.3	0.7476
AT5G60670			Ribosomal protein L11 family p...		Lus10015085 [exp]	107.5	0.7561
AT4G23020			unknown protein		Lus10029604 [exp]	111.4	0.7510
AT2G47550			Plant invertase/pectin methyle...		Lus10020680 [exp]	139.4	0.7674
AT2G04280			unknown protein		Lus10036415 [exp]	148.7	0.7434

Compare expression of checked genes

Lus10031225 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.