Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031802 [exp] 262 / 2e-88 ND / Lus10031227 [exp] 124 / 2e-34 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031226 pacid=23151080 polypeptide=Lus10031226 locus=Lus10031226.g ID=Lus10031226.BGIv1.0 annot-version=v1.0 ATGAGAATTCAGAATAGCAGGCCTCAGTTCCCGTTTCTGTACCCCTCTGTGGAGCTGAATGCTCCAAGATCATCTAAAGCTCACTCGATTCGAGGTCCCT TAATGGAGAATCTCGAATCGCCAGCAGTTGCTGATGCGGGAAGACAGAACAGTGTAAGGGATTTAATGCCAGAAATGCAGAAACTAGAATCTCAAAGACA TCATGCAACTGGTAAACGAGGAAGACCTGCCAAAAATCAAACACATCATGCAACTGGTAAACGAGGAAGACCTACCGAAAATTCTAGGGTTCATAAATGG AAAAACTGTAGCCCTGAGCATTCTAGACCTATAGTCTTGGCGTTGAGTGCTGTGCCTCCATCAGTTGCCAAAAAACGCTTCTCGAAGAGGGCTCCTGTTC TTAGTGAACATGATCGCAATAATCAGGGAACGGAGTCAACCAGTCGCGTCTGGAGAACTTCTCCTTGTGTTGTTAGTGAAGTTGATCATAATAATCAGAG AACGGAGTCCAGCAGTCGTGTCTGGAAAACTGCTCCAGTTGTTGGTGAACCTGATCGTAATCAGGAAGCGAAGTCCACCCACAGCGTCTGGAAAACTGCC GTAAATCAAGATAAAGGCAAGGCTGCAGAAACCAAGACCGGGCCAGCAACGTCACCCAAGAAAGACGCAGCAAGTGCCGCCGAAGAGAAAGAGGTGAAGG CCAAGGAAGGTGGTGCCTGCAAGTGA
AA sequence Show only first row Show all	>Lus10031226 pacid=23151080 polypeptide=Lus10031226 locus=Lus10031226.g ID=Lus10031226.BGIv1.0 annot-version=v1.0 MRIQNSRPQFPFLYPSVELNAPRSSKAHSIRGPLMENLESPAVADAGRQNSVRDLMPEMQKLESQRHHATGKRGRPAKNQTHHATGKRGRPTENSRVHKW KNCSPEHSRPIVLALSAVPPSVAKKRFSKRAPVLSEHDRNNQGTESTSRVWRTSPCVVSEVDHNNQRTESSSRVWKTAPVVGEPDRNQEAKSTHSVWKTA VNQDKGKAAETKTGPATSPKKDAASAAEEKEVKAKEGGACK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031226 [exp]	0	1
AT3G09850			D111/G-patch domain-containing...		Lus10019584 [exp]	4.9	0.8435
AT3G14400		UBP25	ubiquitin-specific protease 25...		Lus10005591 [exp]	8.3	0.8337
					Lus10031227 [exp]	8.4	0.8196
AT1G79915			Putative methyltransferase fam...		Lus10035886 [exp]	10.1	0.8512
AT5G27660			Trypsin family protein with PD...		Lus10037815 [exp]	15.9	0.7875
AT4G36290		CRT1	compromised recognition of TCV...		Lus10014276 [exp]	15.9	0.8316
AT5G02930			F-box/RNI-like superfamily pro...		Lus10029589 [exp]	18.6	0.8119
AT2G11000		ATMAK10	MAK10 homologue (.1.2)		Lus10038121 [exp]	19.1	0.8134
AT2G45320			unknown protein		Lus10030280 [exp]	19.6	0.8013
AT4G21585		ENDO4	endonuclease 4 (.1)		Lus10018451 [exp]	21.5	0.8323

Compare expression of checked genes

Lus10031226 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.