Plant FIBer expression Database

Lus10031227 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031802
[exp]
132 / 1e-37 ND /
Lus10031226
[exp]
117 / 6e-32 ND 39 / 0.004
Lus10031803
[exp]
45 / 2e-05 AT5G06310 226 / 5e-69 protection of telomeres 1b, Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues

No hit found
PFAM info
Representative CDS sequence
>Lus10031227 pacid=23151128 polypeptide=Lus10031227 locus=Lus10031227.g ID=Lus10031227.BGIv1.0 annot-version=v1.0
ATGGAGATTGGAGGGGATGTACTCAATATACTCGAGGCCAGAGCTTGCACTCCTCAGAAAGTAAACTTCTTTGGCGTTGTCGTCGTAGAGTTGAACTTAC
CCCGCCCCTTCAATGGCTCCGTGTTTTTCTTGGATTTCAGACTGGTCAATGAGTCAAAGGAAGGCACCGCCAAGCTATTCAAATCCCACCCAGAACAAGG
CGGCAAATCCGATGACCGTCTGCTTGATAAGAAAAATTCAGGTCCCTTGATGGAGTATCTCAAATCGCCTGGTCTGTTACGACCAGCAGTTGCTGATGCG
GAAGGACAGAACAGTGGAAGGGATTCTATGCCAGAAATACAGAAACTAGGATCTGAAAGACATCATACAACTGGTAAACGGGGAAGACCTGCCAAAAATT
CAAGGGTTCATAAAAGGCAAAACTGTAGCCCTCAGTGTTCTAGACCTATAGTCTTGGCGTTGAGTGCTGTACCTCCATCAGGTGCCCGAAAACGCGTCTC
GAAGAAAAGTGCTCATGTTGCTAGTGCACCTAGTCGTAGTCTGGGAGCGCAGGAGCCCGCCAATCCTGTCTGGAAAGGTGCTCCTCCTGTTGAAGTTAAA
AGCAACGAACCGACCTTCTCCGGTTCAGTAATCGACAGCGCTAAAGATGGAGTGGAAGAAGACGTGAAATTGTTTCTCGAGCTAGTACATTCCCTGCAGT
CAAGTGTAGCCAAAGGGAAAGAGGGGAAGGCCAAGGAAACAGAACAGCTAGCCGGCTAG
AA sequence
>Lus10031227 pacid=23151128 polypeptide=Lus10031227 locus=Lus10031227.g ID=Lus10031227.BGIv1.0 annot-version=v1.0
MEIGGDVLNILEARACTPQKVNFFGVVVVELNLPRPFNGSVFFLDFRLVNESKEGTAKLFKSHPEQGGKSDDRLLDKKNSGPLMEYLKSPGLLRPAVADA
EGQNSGRDSMPEIQKLGSERHHTTGKRGRPAKNSRVHKRQNCSPQCSRPIVLALSAVPPSGARKRVSKKSAHVASAPSRSLGAQEPANPVWKGAPPVEVK
SNEPTFSGSVIDSAKDGVEEDVKLFLELVHSLQSSVAKGKEGKAKETEQLAG

DESeq2's median of ratios [FLAX]

Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
Lus10031227
[exp]
0 1
AT2G37680 PAT3, FRY1, FHY... unknown protein Lus10023781
[exp]
4.6 0.8291
Lus10031226
[exp]
8.4 0.8196
AT1G15320 unknown protein Lus10025746
[exp]
9.6 0.7961
AT4G21800 QQT2 quatre-quart2, P-loop containi... Lus10040022
[exp]
16.4 0.8210
AT1G28100 unknown protein Lus10002573
[exp]
21.8 0.8012
AT5G38720 unknown protein Lus10023232
[exp]
27.9 0.8214
AT3G07750 3'-5'-exoribonuclease family p... Lus10001173
[exp]
29.0 0.8066
AT2G35736 unknown protein Lus10028935
[exp]
32.0 0.8073
AT3G19170 ATPREP1, ATZNMP presequence protease 1 (.1.2) Lus10027907
[exp]
42.8 0.8145
AT1G04530 TPR4 tetratricopeptide repeat 4, Te... Lus10023721
[exp]
50.2 0.7995

Lus10031227 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.