Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 155 / 4e-42 RLK1 receptor-like protein kinase 1 (.1) AT4G21380 73 / 4e-14 ARK3 receptor kinase 3 (.1) AT1G11280 71 / 2e-13 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G65790 69 / 8e-13 ARK1 receptor kinase 1 (.1) AT1G61550 69 / 1e-12 S-locus lectin protein kinase family protein (.1) AT4G00340 67 / 6e-12 RLK4 receptor-like protein kinase 4 (.1) AT1G65800 66 / 1e-11 ARK2 receptor kinase 2 (.1) AT1G61400 63 / 7e-11 S-locus lectin protein kinase family protein (.1) AT1G61380 63 / 8e-11 SD1-29 S-domain-1 29 (.1) AT1G61440 63 / 1e-10 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031230 [exp] 382 / 1e-126 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 198 / 2e-57 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 181 / 3e-51 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 176 / 2e-49 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 176 / 2e-49 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 175 / 3e-49 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10040160 [exp] 152 / 3e-41 AT5G60900 267 / 1e-88 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 129 / 7e-33 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 119 / 2e-29 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G212000 [exp] 299 / 3e-95 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 291 / 3e-92 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 254 / 2e-78 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 254 / 2e-78 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 248 / 7e-76 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 246 / 4e-75 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014401 [exp] 235 / 3e-74 AT5G60900 280 / 2e-86 receptor-like protein kinase 1 (.1) Potri.001G153800 [exp] 213 / 4e-63 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G228200 [exp] 199 / 1e-57 AT5G60900 601 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 196 / 7e-57 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [flax] [poplar] S_locus_glycop S-locus glycoprotein domain PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10031228 pacid=23151110 polypeptide=Lus10031228 locus=Lus10031228.g ID=Lus10031228.BGIv1.0 annot-version=v1.0 ATGGCGCCTTCTTCTCCATATTTCCTTCTATTACTAATCCTTATCTCAACCTCTTTCGTCACTCAATCCACCGGCCGAAACATCACAGTCGGCAATTCCC TCTCCGCCGCGTGGCTCTCCCCCTTCGGCGATTTTGCCTTCGGATTCCGTCCCCTCAATGGAACCAACACTTTCCTCCTCTGTATCTATTACGCCAGAAT CCCCGACCGAACAATCGTCTGGTACGCCAACGGCGACTCCCCTGCTCCGGCAGGATCAACCGCCGAGCTAACATCCACCTCCGGGATCGTCCTAAGAAGT CCACAAGGCTCCGAGCTGTGGCGATCCGGCCAACTGTCCGGCGGAGTAGAGTCCGCTTCCATGACTGACGCCGGCAATTTCGTGGTTCGGGGTCGAAACT CCACCTTGTGGGAAACGTTTCGAAACCCAACAGACACGATTCTCCCGTCCCAAACACTAAACCAAAGAGATGTGCTTTTCTCTCGTCGAGCGGATTCCGA TTTCTCCAAAGGGAAGCAACTTATTTTCGACGATTCAGGGTTTCTGTATGTGGCTCGAGATGATACCAGCCGTACTTTCAATTTCACTGAAGACGAGCCG CCATCTCCAAGATGGTTCTATCACAGAGTAGTTCTGACTTTCGATGGCGTTTTGACTCAGTACTATTATCCGAAATCCGGAGGCGGAAATTGGATTCTCG TGTGGTTCCTGCCGAAGGATATCTGCTATATTCTAAGGACGGATATTGGCACCGGCATTTGTGGATTCTACAGCGTGTGCAGCCTTCAATCAGAAGGAAG GCCCAGATGCGAATGCCCAACTGGCTATTCTCTGATGGATCCCAGTAATCCGTACGGAGACTGTAGAGCTAACTATACCCAGCGTTGTGAAGAAGACAAT GAAGGAGTTCCAATTGATGAATTAAATGGGTTTGTAGAGGTTCTATACACCGATTGA
AA sequence Show only first row Show all	>Lus10031228 pacid=23151110 polypeptide=Lus10031228 locus=Lus10031228.g ID=Lus10031228.BGIv1.0 annot-version=v1.0 MAPSSPYFLLLLILISTSFVTQSTGRNITVGNSLSAAWLSPFGDFAFGFRPLNGTNTFLLCIYYARIPDRTIVWYANGDSPAPAGSTAELTSTSGIVLRS PQGSELWRSGQLSGGVESASMTDAGNFVVRGRNSTLWETFRNPTDTILPSQTLNQRDVLFSRRADSDFSKGKQLIFDDSGFLYVARDDTSRTFNFTEDEP PSPRWFYHRVVLTFDGVLTQYYYPKSGGGNWILVWFLPKDICYILRTDIGTGICGFYSVCSLQSEGRPRCECPTGYSLMDPSNPYGDCRANYTQRCEEDN EGVPIDELNGFVEVLYTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031228 [exp]	0	1
AT2G02080	C2H2ZnF	ATIDD4	indeterminate(ID)-domain 4 (.1...		Lus10031928 [exp]	182.2	0.5215

Compare expression of checked genes

Lus10031228 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.