Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 58 / 2e-10 RLK1 receptor-like protein kinase 1 (.1) AT3G09780 52 / 3e-08 CCR1, ATCRR1 CRINKLY4 related 1 (.1) AT4G11890 47 / 1e-06 Protein kinase superfamily protein (.1.2.3.4) AT3G59420 47 / 1e-06 ACR4 crinkly4 (.1) AT2G14510 47 / 2e-06 Leucine-rich repeat protein kinase family protein (.1) AT2G39180 47 / 2e-06 CCR2, ATCRR2 CRINKLY4 related 2 (.1) AT2G14440 46 / 3e-06 Leucine-rich repeat protein kinase family protein (.1) AT3G59730 45 / 4e-06 Concanavalin A-like lectin protein kinase family protein (.1) AT3G53810 45 / 5e-06 Concanavalin A-like lectin protein kinase family protein (.1) AT5G01560 45 / 5e-06 LECRKA4.3 lectin receptor kinase a4.3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031230 [exp] 193 / 4e-58 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 100 / 6e-25 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 83 / 6e-19 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 79 / 1e-17 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 76 / 2e-16 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10040160 [exp] 71 / 1e-14 AT5G60900 267 / 1e-88 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 71 / 1e-14 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 52 / 4e-08 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10033363 [exp] 51 / 1e-07 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G212000 [exp] 135 / 2e-37 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 131 / 6e-36 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 110 / 1e-28 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 110 / 1e-28 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211932 [exp] 109 / 1e-28 AT5G60900 510 / 7e-175 receptor-like protein kinase 1 (.1) Potri.T084200 [exp] 109 / 3e-28 AT5G60900 573 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 109 / 3e-28 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084601 [exp] 107 / 2e-27 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 107 / 2e-27 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 106 / 3e-27 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031229 pacid=23151040 polypeptide=Lus10031229 locus=Lus10031229.g ID=Lus10031229.BGIv1.0 annot-version=v1.0 ATGTGTTGGAAGAAGAAGCTGCCGCTTTCGAATGGGAGGCTTGACCCTCGTGTGGACGGGAAGGCTCTTCTCAAAGTTCGGAAAGGGAAACTCGATCCAG TGGTGAAGTTTATGAAGAAAGACAAGGAAGATATGATTGTGGTGGGATCAGTGCTTCTGGGTTTCTCAACTTTCTTTAATGTAGTGTTAGCAGTTGTAGG TTGTTTGGGATATCATTTCATTTACAGGAATAAGAAGAAGAAGAGAAGGTCTCCTATAAGCTCTGCAGATAGTGTCGTGGAACCAAATCTGATGCGTTTC AGATACACTGATCTCGAAGAGGCGACAAATGGGTTCCAGGAAGAGCTGGGGAGGGGAGCTGTTGGATTAGTATACAAAGGCCAGCTGCAGCAGAACGGTG TTCAAATAGCTGTAAGAAGCTACAATCTTTCGGCCAAGATAGCGGGTTCAAGGAATTCCGAAACGAGGTTAGTGTAA
AA sequence Show only first row Show all	>Lus10031229 pacid=23151040 polypeptide=Lus10031229 locus=Lus10031229.g ID=Lus10031229.BGIv1.0 annot-version=v1.0 MCWKKKLPLSNGRLDPRVDGKALLKVRKGKLDPVVKFMKKDKEDMIVVGSVLLGFSTFFNVVLAVVGCLGYHFIYRNKKKKRRSPISSADSVVEPNLMRF RYTDLEEATNGFQEELGRGAVGLVYKGQLQQNGVQIAVRSYNLSAKIAGSRNSETRLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11890			Protein kinase superfamily pro...		Lus10031229 [exp]	0	1
					Lus10011218 [exp]	22.6	0.4434
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10035616 [exp]	27.4	0.4390
AT2G17030			F-box family protein with a do...		Lus10022619 [exp]	29.3	0.4389
AT5G12060			Plant self-incompatibility pro...		Lus10023085 [exp]	34.5	0.4341
AT3G47570			Leucine-rich repeat protein ki...		Lus10035429 [exp]	35.3	0.4330
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10006693 [exp]	36.2	0.4341
AT5G18460			Protein of Unknown Function (D...		Lus10006861 [exp]	37.8	0.4341
AT1G62310			transcription factor jumonji (...		Lus10004603 [exp]	42.5	0.4235
AT5G03620			Subtilisin-like serine endopep...		Lus10003254 [exp]	45.8	0.4233
					Lus10008679 [exp]	47.5	0.4213

Compare expression of checked genes

Lus10031229 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.