Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 374 / 6e-118 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 333 / 2e-101 lectin protein kinase family protein (.1) AT4G00340 321 / 4e-97 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 290 / 3e-85 S-locus lectin protein kinase family protein (.1) AT1G61440 288 / 3e-85 S-locus lectin protein kinase family protein (.1) AT4G32300 287 / 2e-84 SD2-5 S-domain-2 5 (.1) AT1G61380 280 / 3e-82 SD1-29 S-domain-1 29 (.1) AT1G11280 280 / 7e-82 S-locus lectin protein kinase family protein (.1.2.3.4) AT1G61360 278 / 2e-81 S-locus lectin protein kinase family protein (.1.2) AT5G24080 269 / 2e-81 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 661 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 639 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 639 / 0 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 636 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 602 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 470 / 1e-153 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 454 / 2e-147 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10031228 [exp] 382 / 2e-126 AT5G60900 161 / 2e-44 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 370 / 2e-119 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G212000 [exp] 968 / 0 AT5G60900 655 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084500 [exp] 952 / 0 AT5G60900 653 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084300 [exp] 843 / 0 AT5G60900 645 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084401 [exp] 843 / 0 AT5G60900 641 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014600 [exp] 785 / 0 AT5G60900 666 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014100 [exp] 784 / 0 AT5G60900 669 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G153800 [exp] 714 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084200 [exp] 712 / 0 AT5G60900 573 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 694 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 693 / 0 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10031230 pacid=23151169 polypeptide=Lus10031230 locus=Lus10031230.g ID=Lus10031230.BGIv1.0 annot-version=v1.0 ATGGCTACTGCATCATCATCATCATCATCTGCAATTCTCCACCTTTTCCTACTCTCCCCACTCCTCCTCCTGCTCGCATCCTCTGCCGTTGCTCAAAACA TCTCCGTCGGCTATACACTCACCGCCGCCGCCGACAACTCATCCCAATTGCTCTCCCCCTCCGGAGATTTCGCCTTCGGATTCGTCCCCATCTCCGGAAA CAACACCATCTTCCTCCTCTGCATCTACTACGCCAGAATCCCCGACCGAACAATCGTTTGGTACGCCAACGGCGACTCCCCTGCTCCGACAGGCTCAACC GCCCAGCTAACCTCCACCTCCGGCATCATCATTACCGACCCACAAGGAACCGTGCTCTGGCGATCAGGATCACTCACCGGCGGGGTCGACTCCGCTTCAC TAACCGACGCCGGCAATTTCATCATCCGGAGTCGAAGCTCGTCCCCCTTATGGGAAACGTTTCGAAACCCCACCGACACGATTCTCCCTTCCCAAACTCT AGACGGCGGTTCGGCTTTACTCTCCTCCCGCCGATCGGATTCAAACTTCTCCATCGGCAGGTTCCGCCTAGTGCTCCAAAACGACGGCAATTTGGTCCTC ACCACTGTCAATCTCCCCACCGAGAAAACCAATACTCCTCCTTACTACGCCACCGCGACGGATTCCTCCACCAATCCAGGGAAGCAGCTCGTATTCGATA ATCTAGGGTTCCTCTACGTCAGTAGAGAGAATTCCAGCGAGAATTTCAATCTGACGGAGAACATGCCGTCAACAAACGGCGACGGCAGGTTTTACCACAG AGTAGTACTCCGATACGACGGCGTATTGACTCAGTACTATTACCCGAAATCAGGTAACCGAAATTCAAATTGGTCTCCTATGTGGCATCAGCCGGAGAAC ATCTGCTTCAATTTGAGGACGGATGTCGGCAGCGGGCCTTGCGGGTTCAACAGCGTATGCAATCTCGAATCGGAAGGGAAACCGAGGTGCCAATGCCCGA CAGGGTATTCGTTGATGGATCCGACCGATTCGAATGGAAACTGTAGGGCTAATTATACGCAGGGTTGTGAAGAAGAGACCGATGGAGTGTCGATTGGTGA ATTGTACGGGTTCGAAGAGATTCGGAACACGGATTGGCCGACTTCGGATTACGCGCTGTTGCAGCCTTTCACGGAGGACCAATGCAGGCAGTCGTGCTTG GAGGATTGTATGTGTGCTGTCGCGATTTTTCGGTCGGGGGATATGTGTTGGAAGAAGAAGCTGCCCCTTTCGAACGGGAGGCTCGATCCCGGTTTGAACG GGAAGGCTCTGCTCAAGGTTCGGAGAGGGAAAGTGAATGATCGTCGGAGAGACGGTGAGTTTCCGGTCAGTCCGGAGGTGAGGTATGTGGAGAAGAAGGA CAAGGAGAGGATGATCACGGTTGGATCGGTGCTTCTCGGTTTCTCGAGTTTCGTCAATCTTGTGCTCGTGGTTGCGCTCTGTTTCGGGTTTCATTTCGTT TACAGGAGGAAGAAGAGGAAGTCTCCAGTAGGTGCGGTGGACAGCGTGATAGAGCCGAATCTGATGTGTTTCGAGTACTCGGATCTCGAAGAGGCTACAA ACGGGTTCGAGGAAGAGCTCGGAAGGGGAGCTTTCGGGGTGGTTTACAAAGGCGAGCTGCAGAATGGTGCTCTTGTAGCTGTTAAGAAGCTGAACTCTTT CGGGCAGGATAGTGCTGGGAAGGAATTCAAGAACGAGGTTAGCGTGATCGGCCAGACCCATCACCGAAACCTGGTTCGACTCGTTGGGTACTGCGAGGAA GGGAAAGACCGGCAGCTGTTGGTTTACGAGTTCCTTAGCAACGGGACGCTGGCGGACTACCTGTTTGGGGAGGTGAAGCCGAGTTGGGGGAAGAGGATTC AGATTGCGTTAGGAATCGCGAGGGGGATTCTGTACCTGCACGAAGAATGCACCACTCAGGTAATCCACTGCGACATCAAGCCTCAGAACATACTCCTCGA CGACAAGTACACCGCGAGGATCTCCGATTTCGGGCTGGCAAAGCTCCTGGTGCTGAACCAGACCCAGACCCAGACCGCCATTCGGGGGACCAAGGGTTAC GTGGCGCCCGAATGGTTCAGGAACACCCCTGTTACGACAAAAGTTGATGTTTATAGCTTCGGGGTGTTGCTTCTGGAGATCATTAGCTGCAGGAAGAGCG TGGATGCCAATGAGAGCTCCACTGACAGGGCGATCCTGACCTACTGGGCTTACGATTGCTACTGTGAGGGAGCCTTTGGCGATCTGGTCGAGTACGATAT GGAGGCGATGAGTGATTCGGATAAGCTGGAGAAGTATGTGAAGATTGCCATATGGTGCATTCAGGAAGATCCCAATGTGAGGCCTACGATGAAGCAGGTC TGGCAGATGCTTGAAGGTCTGACCGTGGTTCCGGTTCCTCCGTGTCCGACCCCTTACACAGTGACGGTCACCAAGGATGTTTGA
AA sequence Show only first row Show all	>Lus10031230 pacid=23151169 polypeptide=Lus10031230 locus=Lus10031230.g ID=Lus10031230.BGIv1.0 annot-version=v1.0 MATASSSSSSAILHLFLLSPLLLLLASSAVAQNISVGYTLTAAADNSSQLLSPSGDFAFGFVPISGNNTIFLLCIYYARIPDRTIVWYANGDSPAPTGST AQLTSTSGIIITDPQGTVLWRSGSLTGGVDSASLTDAGNFIIRSRSSSPLWETFRNPTDTILPSQTLDGGSALLSSRRSDSNFSIGRFRLVLQNDGNLVL TTVNLPTEKTNTPPYYATATDSSTNPGKQLVFDNLGFLYVSRENSSENFNLTENMPSTNGDGRFYHRVVLRYDGVLTQYYYPKSGNRNSNWSPMWHQPEN ICFNLRTDVGSGPCGFNSVCNLESEGKPRCQCPTGYSLMDPTDSNGNCRANYTQGCEEETDGVSIGELYGFEEIRNTDWPTSDYALLQPFTEDQCRQSCL EDCMCAVAIFRSGDMCWKKKLPLSNGRLDPGLNGKALLKVRRGKVNDRRRDGEFPVSPEVRYVEKKDKERMITVGSVLLGFSSFVNLVLVVALCFGFHFV YRRKKRKSPVGAVDSVIEPNLMCFEYSDLEEATNGFEEELGRGAFGVVYKGELQNGALVAVKKLNSFGQDSAGKEFKNEVSVIGQTHHRNLVRLVGYCEE GKDRQLLVYEFLSNGTLADYLFGEVKPSWGKRIQIALGIARGILYLHEECTTQVIHCDIKPQNILLDDKYTARISDFGLAKLLVLNQTQTQTAIRGTKGY VAPEWFRNTPVTTKVDVYSFGVLLLEIISCRKSVDANESSTDRAILTYWAYDCYCEGAFGDLVEYDMEAMSDSDKLEKYVKIAIWCIQEDPNVRPTMKQV WQMLEGLTVVPVPPCPTPYTVTVTKDV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031230 [exp]	0	1
AT2G23200			Protein kinase superfamily pro...		Lus10012101 [exp]	1.0	0.9243
AT4G34950			Major facilitator superfamily ...		Lus10034491 [exp]	2.8	0.8619
AT3G60690			SAUR-like auxin-responsive pro...		Lus10009286 [exp]	4.5	0.8991
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019036 [exp]	5.2	0.8947
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10014427 [exp]	5.7	0.8768
AT5G59030		COPT1	copper transporter 1 (.1)		Lus10016464 [exp]	7.1	0.8423
AT4G08850			Leucine-rich repeat receptor-l...		Lus10019035 [exp]	7.5	0.8626
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10022918 [exp]	10.5	0.8600
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Lus10022636 [exp]	12.2	0.8738
AT4G38660			Pathogenesis-related thaumatin...		Lus10028447 [exp]	14.1	0.8639

Compare expression of checked genes

Lus10031230 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.