Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 536 / 0 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 347 / 7e-107 lectin protein kinase family protein (.1) AT2G19130 333 / 1e-101 S-locus lectin protein kinase family protein (.1) AT4G32300 293 / 6e-87 SD2-5 S-domain-2 5 (.1) AT5G35370 284 / 2e-83 S-locus lectin protein kinase family protein (.1) AT5G24080 273 / 7e-83 Protein kinase superfamily protein (.1) AT4G00340 274 / 7e-80 RLK4 receptor-like protein kinase 4 (.1) AT4G11900 270 / 3e-78 S-locus lectin protein kinase family protein (.1) AT4G21390 265 / 2e-76 B120 S-locus lectin protein kinase family protein (.1) AT4G21380 257 / 1e-73 ARK3 receptor kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031805 [exp] 1543 / 0 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10024195 [exp] 911 / 0 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 642 / 0 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 640 / 0 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 598 / 0 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 489 / 5e-161 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 482 / 2e-158 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 434 / 2e-144 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10029802 [exp] 368 / 5e-115 AT2G19130 729 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085000 [exp] 870 / 0 AT5G60900 559 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085100 [exp] 870 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084900 [exp] 863 / 0 AT5G60900 548 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211800 [exp] 857 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084701 [exp] 857 / 0 AT5G60900 550 / 0.0 receptor-like protein kinase 1 (.1) Potri.T085150 [exp] 850 / 0 AT5G60900 554 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211366 [exp] 844 / 0 AT5G60900 568 / 0.0 receptor-like protein kinase 1 (.1) Potri.003G211700 [exp] 841 / 0 AT5G60900 527 / 5e-177 receptor-like protein kinase 1 (.1) Potri.001G014700 [exp] 832 / 0 AT5G60900 575 / 0.0 receptor-like protein kinase 1 (.1) Potri.T084601 [exp] 816 / 0 AT5G60900 519 / 3e-174 receptor-like protein kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0016 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10031231 pacid=23151052 polypeptide=Lus10031231 locus=Lus10031231.g ID=Lus10031231.BGIv1.0 annot-version=v1.0 ATGGCTAACTTCCCCTTCTCCATACTCCTTCTATGGCTTCCATTACTCACCACGGTCGACTCTCAGCCCGCAGCCGCCGACCACCGCAACATAACGTTAG GCTCTTCCCTGACCGCATCATCTAATGACTACTGGCTCTCGCCGTCCGGTGACTTTGCGTTCGGGTTCCAACGAGTTGTTGAGGGAAGCAAAGACAGTGG GGAATTCTTGCTAGCCATTTGGTTCGACAGGATCCCGCAGCGGACCGTGGTCTGGTCAGCGAACCGGAACAACTTGGTGCCTGGTGGGTCGTCCGTCAAG CTCACGAAAGATGGCAGCTTGATCTTGGCCGACCCGTCAGGCAAGCAGGTGTGGAATGCTAATGCAATTGGCGGCTCTGGAGTTTCCTATGGTGCGTTGC TTGATACGGGGAATTTCATCCTGGCTGATCGAAACTTCGTCGTCTTGTGGGGGAGTTTCGATCAGCCTACGGACACGATGTTGCCTACTCAGACTTTGAA AAAAGGTGCACAACAAATATCCAAATATTCAAGCTCAAACTACTCCACCGGAAGATTCAAGCTCAGTCTCCAGACCGACGGCAACTTGGTTCTCTACACA GTCTTCTACCCACAATCAGGAAGCAACTACGCTTACTGGGCAACCGCCACCGGAGACGGAAACGCCGTCGTATTCAACCGGACAGGATCCCTCTTCCTAA CCACCACCAACGGAACAATCATCAACGCCCTGTTCAACAACCGAGAATCCACCAAAGATTTCTACAACCGCGTAACAATCGACCACGACGGAGTCTTTCG GCGGTACATCCACCCGAAATCCACCTCCAATTCATCAAACTGGCCAATGGAATGGACAGCGTTAGATTCGGAGCCGTCGAACATCTGCACGCAGATCTTC GGGACCACCGGCGGCGGAGCTTGCGGCTTCAATTCCTACTGCCAGATGGAAGACGGCCAGCTCCCCCAATGCAACTGCCCGCAAGGTTACACCTATCTGG ACTCTTCCGATCGGAGCAAAGGCTGCGTGAAGAACTTCGTCCCGCAGAACTGTCTCCTAAACGAGAACGACAAATTCGACCTCGTCGAGATGATCAACGC CGATTTCCCTCAGGGAGATTACAGATTCCTGTCGTCGATCTCCGAGGACGCTTGCCGCGATACTTGTATGAGCGATTGCTTATGTGATGCAGTGACCTTT AATGGCGGATCTTGTTGGACGAAGAGAGCTCCTCTGTCTAACGGAAATGTCGATCCGAACAACGGAGGGAAAACTCTGATCAAAGTTAGACGAGTGAATT CGACGACTGATCAAACTTCTGATCTTAGGAAAGATCGGTCGATGAATCTCATCGTTACTGCTGGATGGATTCTGTTAGGCGGATCGGTGTTCGTCAATCT CTTGTTTCTCTACGCCAGCTGTCCATGGCGGAAGAATAATCATCAACGTTTCATCAGCCCAGTTCGTGACGACGGCACAAATCTGATGAGCTTTGCGTAC AGAGAGATGGAATTGGCGACCGGTGGATTCAAGCAGATCCTGGGGAGTGGATCGTCAGGGACTGTTTACAAAGGCGTTCTGAATCGAAGCACGAATTCGG AACAGTTAGTTGCAGTCAAGGTGCTGGACAAAATGCCCAAAAGAAAAAATTGCCAGGATGATATTAGAGTGTTCGCAACTGAATTGAAGTTGATCAGCGG TACGAACCATAAAAGTTTGGTCAAACTGGTCGGGTTCTGCAACGAAGGGGATCATTGTCTACTCGTGTACGAGTACATGAGCAACGGATCGTTGGCCGAT TCGTTGTTTAATCAGCCAACGATCGACTGGTACACGAGGATTCAAATAGCCTACTCGGTAGCGAGAGGGCTCGTCTACCTACACGAGGAATGCAGCACAC AGATAATTCACTGCGACATCAAGCCGCAAAACATCCTCCTCGACTCTACAATGACAGCCCGAATCTCCGATTTCGGGCTGTCCAAGCTGATGCAGCCGGA CCAAACCAAGACAGTGACCGCGATCCGCGGCACTAAGGGGTATCTAGCGCCGGAATGGTTCCGGAACGTGGCTATAACAGCGAAAGTCGACGTGCACAGC TTTGGTATCATGCTGCTGGAGCTGGTCTGCTGCAGGAAGAACTGCATGATGGAGGTCGACAACGAAGAGGAGATGGTGCTGGTGGATTGGGCTTATGAGT GTTACAGTAAGGGGAAGCTGTACAAGCTCGTGGAGAAGGACGAATCGGCATTGGCGGATATCGGGAGAGTTGAGAGGTTTGTGAAAGTTGCTATGTGGTG TATTCAAGAGGATCCGTCGTTGAGACCTGGGATGAAGAAGGTTGCTCTTATGCTAGAAGGTGCTGTTGCTGTCTCCGAGCCGCCCGACCCGAACTCCTTC ATCAGTGCCGTGTGA
AA sequence Show only first row Show all	>Lus10031231 pacid=23151052 polypeptide=Lus10031231 locus=Lus10031231.g ID=Lus10031231.BGIv1.0 annot-version=v1.0 MANFPFSILLLWLPLLTTVDSQPAAADHRNITLGSSLTASSNDYWLSPSGDFAFGFQRVVEGSKDSGEFLLAIWFDRIPQRTVVWSANRNNLVPGGSSVK LTKDGSLILADPSGKQVWNANAIGGSGVSYGALLDTGNFILADRNFVVLWGSFDQPTDTMLPTQTLKKGAQQISKYSSSNYSTGRFKLSLQTDGNLVLYT VFYPQSGSNYAYWATATGDGNAVVFNRTGSLFLTTTNGTIINALFNNRESTKDFYNRVTIDHDGVFRRYIHPKSTSNSSNWPMEWTALDSEPSNICTQIF GTTGGGACGFNSYCQMEDGQLPQCNCPQGYTYLDSSDRSKGCVKNFVPQNCLLNENDKFDLVEMINADFPQGDYRFLSSISEDACRDTCMSDCLCDAVTF NGGSCWTKRAPLSNGNVDPNNGGKTLIKVRRVNSTTDQTSDLRKDRSMNLIVTAGWILLGGSVFVNLLFLYASCPWRKNNHQRFISPVRDDGTNLMSFAY REMELATGGFKQILGSGSSGTVYKGVLNRSTNSEQLVAVKVLDKMPKRKNCQDDIRVFATELKLISGTNHKSLVKLVGFCNEGDHCLLVYEYMSNGSLAD SLFNQPTIDWYTRIQIAYSVARGLVYLHEECSTQIIHCDIKPQNILLDSTMTARISDFGLSKLMQPDQTKTVTAIRGTKGYLAPEWFRNVAITAKVDVHS FGIMLLELVCCRKNCMMEVDNEEEMVLVDWAYECYSKGKLYKLVEKDESALADIGRVERFVKVAMWCIQEDPSLRPGMKKVALMLEGAVAVSEPPDPNSF ISAV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60900		RLK1	receptor-like protein kinase 1...		Lus10031231 [exp]	0	1
AT1G74320			Protein kinase superfamily pro...		Lus10024127 [exp]	5.2	0.7671
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	5.8	0.8197
					Lus10020479 [exp]	28.0	0.6766
AT1G30720			FAD-binding Berberine family p...		Lus10009639 [exp]	42.0	0.7158
					Lus10041183 [exp]	51.2	0.7243
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014109 [exp]	53.0	0.6744
					Lus10036864 [exp]	54.4	0.7209
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10040115 [exp]	56.7	0.7363
AT5G05340			Peroxidase superfamily protein...		Lus10030148 [exp]	61.8	0.6617
AT1G11410			S-locus lectin protein kinase ...		Lus10007610 [exp]	63.3	0.6918

Compare expression of checked genes

Lus10031231 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.