Plant FIBer expression Database

Lus10031232 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G42190 62 / 6e-13 unknown protein
AT3G57930 56 / 1e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031806
[exp]
157 / 7e-50 AT3G57930 93 / 2e-24 unknown protein
Lus10031233
[exp]
98 / 5e-27 AT3G57930 78 / 3e-19 unknown protein
Lus10031807
[exp]
86 / 3e-22 AT3G57930 86 / 2e-22 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.003G211200
[exp]
107 / 6e-31 AT3G57930 108 / 2e-31 unknown protein
Potri.T085200
[exp]
107 / 1e-30 AT3G57930 109 / 1e-31 unknown protein
Potri.001G015000
[exp]
101 / 2e-28 AT3G57930 108 / 4e-31 unknown protein
PFAM info
Representative CDS sequence
>Lus10031232 pacid=23151141 polypeptide=Lus10031232 locus=Lus10031232.g ID=Lus10031232.BGIv1.0 annot-version=v1.0
ATGGGGAGAGGTAGAGGAAAGGGGAAAAAGCTGACTGTTAGCAATCATGAAGATGGTGGAAGTGGAGAAGAAGAAGAAGAGAAGATTCCTGCACAGAAGA
GAAGAGGGAGGCCACAGAAGCCCCTGAAGGATGAGATCGGTGATGAAGAAGTCGAGAAGATGGAAGAAGACAATGGCAAGAAGAGGAGGCGGAACTCGCA
GAAGGTGAAGGAGAAACCGGATTCGGTCAAGAAGGAAGCCAACAATGGTGTAGTAGTAGTAGGAGAAGGAGGAGCAAACTCTACTACTAATACTGACGAT
GACTTGACCAAGACTATTAACGGGTTTAGGCAGAATGGAAGCAGGCGGAAGAGCACGCCTCGTCGTGCTGCTGAGGCAGGCGTCGAATGCAGGCCAGCGG
GGGTAATGATATAG
AA sequence
>Lus10031232 pacid=23151141 polypeptide=Lus10031232 locus=Lus10031232.g ID=Lus10031232.BGIv1.0 annot-version=v1.0
MGRGRGKGKKLTVSNHEDGGSGEEEEEKIPAQKRRGRPQKPLKDEIGDEEVEKMEEDNGKKRRRNSQKVKEKPDSVKKEANNGVVVVGEGGANSTTNTDD
DLTKTINGFRQNGSRRKSTPRRAAEAGVECRPAGVMI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G42190 unknown protein Lus10031232
[exp]
0 1
AT5G38290 Peptidyl-tRNA hydrolase family... Lus10031327
[exp]
4.2 0.8904
AT1G18170 FKBP-like peptidyl-prolyl cis-... Lus10027246
[exp]
8.9 0.8987
AT4G34090 unknown protein Lus10041575
[exp]
17.5 0.8670
AT1G79040 PSBR photosystem II subunit R (.1) Lus10042461
[exp]
18.4 0.8835
AT5G28910 unknown protein Lus10027959
[exp]
21.6 0.7605
AT5G52010 C2H2ZnF C2H2-like zinc finger protein ... Lus10018728
[exp]
22.0 0.8434
AT1G12250 Pentapeptide repeat-containing... Lus10024602
[exp]
26.2 0.8616
AT5G19940 Plastid-lipid associated prote... Lus10042448
[exp]
27.7 0.8508
AT1G79040 PSBR photosystem II subunit R (.1) Lus10026205
[exp]
31.8 0.8634
AT1G66130 NAD(P)-binding Rossmann-fold s... Lus10002180
[exp]
32.0 0.8589

Lus10031232 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.