Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42190 58 / 1e-11 unknown protein AT3G57930 55 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031807 [exp] 157 / 1e-50 AT3G57930 86 / 2e-22 unknown protein Lus10031806 [exp] 115 / 1e-33 AT3G57930 93 / 2e-24 unknown protein Lus10031232 [exp] 93 / 3e-25 AT2G42190 88 / 5e-23 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085200 [exp] 100 / 3e-28 AT3G57930 109 / 1e-31 unknown protein Potri.003G211200 [exp] 100 / 5e-28 AT3G57930 108 / 2e-31 unknown protein Potri.001G015000 [exp] 95 / 5e-26 AT3G57930 108 / 4e-31 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031233 pacid=23151048 polypeptide=Lus10031233 locus=Lus10031233.g ID=Lus10031233.BGIv1.0 annot-version=v1.0 ATGGGTAGAGGTAGAGGAAAAGGAAAGAAACTGACTGTTAGCAATCATGAAGATGGTGGAATTAGTGGAGAAGAAGAAGAAGAGAAGATTCCTGCACAGA AGAGAAGGGGGAGACCACATAAACCATTGAAAGATGACGAGGAAATGGAGAAGATCGAAGACGGGGAAGAAGTTGTGATGGAGAATGCGGAAAGTCCAGC GAAGAGGAGAAGGAACTCGAAGGAGAAACAAGATTCAGTCAAGGAAGAAGCAAGGTCTACAAGTACCGATGACTCGAGCAGCAAGTCGAACGGGTTCAGG AAGAATGGGAGCAGGAGAAAAAGCAAGCCTCACCGAGCTGCTGAGGCAGGCGTCGATTGCATTCGACCAGGCTTGATGACATAA
AA sequence Show only first row Show all	>Lus10031233 pacid=23151048 polypeptide=Lus10031233 locus=Lus10031233.g ID=Lus10031233.BGIv1.0 annot-version=v1.0 MGRGRGKGKKLTVSNHEDGGISGEEEEEKIPAQKRRGRPHKPLKDDEEMEKIEDGEEVVMENAESPAKRRRNSKEKQDSVKEEARSTSTDDSSSKSNGFR KNGSRRKSKPHRAAEAGVDCIRPGLMT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57930			unknown protein		Lus10031233 [exp]	0	1
AT5G27440			unknown protein		Lus10041604 [exp]	4.5	0.7545
AT3G46060		ARA3, Ara-3, At...	RAB GTPase homolog 8A (.1.2.3)		Lus10040856 [exp]	4.9	0.6909
AT4G36910		CBSX1, CDCP2, L...	LOSS OF THE TIMING OF ET AND J...		Lus10041576 [exp]	8.2	0.7785
AT5G13470			unknown protein		Lus10005318 [exp]	8.9	0.7085
AT3G14080			Small nuclear ribonucleoprotei...		Lus10013161 [exp]	9.2	0.7102
AT5G46850			unknown protein		Lus10040093 [exp]	12.7	0.6678
					Lus10014667 [exp]	17.3	0.7138
AT5G19151			unknown protein		Lus10034040 [exp]	19.0	0.6758
					Lus10032893 [exp]	24.4	0.6966
AT4G08980		FBW2	F-BOX WITH WD-40 2 (.1.2.3.4.5...		Lus10036483 [exp]	25.3	0.6690

Compare expression of checked genes

Lus10031233 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.