Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44450 588 / 0 BGLU15 beta glucosidase 15 (.1) AT5G44640 585 / 0 BGLU13 beta glucosidase 13 (.1) AT5G42260 581 / 0 BGLU12 beta glucosidase 12 (.1) AT2G44480 569 / 0 BGLU17 beta glucosidase 17 (.1.2) AT3G60130 559 / 0 BGLU16 beta glucosidase 16 (.1.2.3) AT1G26560 548 / 0 BGLU40 beta glucosidase 40 (.1) AT2G25630 544 / 0 BGLU14 beta glucosidase 14 (.1) AT5G54570 522 / 0 BGLU41 beta glucosidase 41 (.1) AT5G24550 513 / 6e-179 BGLU32 beta glucosidase 32 (.1) AT3G18080 510 / 6e-178 BGLU44 B-S glucosidase 44 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031234 [exp] 780 / 0 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2) Lus10031808 [exp] 766 / 0 AT2G44480 560 / 0.0 beta glucosidase 17 (.1.2) Lus10031251 [exp] 673 / 0 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10019531 [exp] 574 / 0 AT2G44480 597 / 0.0 beta glucosidase 17 (.1.2) Lus10012687 [exp] 566 / 0 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2) Lus10026057 [exp] 563 / 0 AT2G44450 554 / 0.0 beta glucosidase 15 (.1) Lus10024941 [exp] 554 / 0 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 552 / 0 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10003915 [exp] 547 / 0 AT2G44480 617 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085301 [exp] 709 / 0 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 707 / 0 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.004G040700 [exp] 655 / 0 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.001G015100 [exp] 640 / 0 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.001G227300 [exp] 612 / 0 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227200 [exp] 582 / 0 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 573 / 0 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.001G222904 [exp] 560 / 0 AT2G44480 531 / 0.0 beta glucosidase 17 (.1.2) Potri.001G223300 [exp] 560 / 0 AT2G44480 529 / 0.0 beta glucosidase 17 (.1.2) Potri.001G222704 [exp] 559 / 0 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10031235 pacid=23150990 polypeptide=Lus10031235 locus=Lus10031235.g ID=Lus10031235.BGIv1.0 annot-version=v1.0 ATGACGACGTTAGTTTCCACCGTCGTCTTGTTCCTTCTCGCTGTTAGTTTTCCCGCTGAAGGAACGCCGTCGTTTTCGGCTGGTTTCAACGTCTCTCCTT CTTCCGCTGTTGCTCCTCCGTTTAACCGGAGTAGTTTCCCGTCAGGTTTCCTCTTCGGAACGGCGTCGTCCGCTTACCAGTATGAAGGCGCCGCCACCGA AGGCGGCAGAGGGCCCAGCATTTGGGATACTTTCACTAAAATTCCAGGGAAGATTATCGACGGTAGCAGCGGGGATGTGGCCATCGATGAGTATAACCGT TACAAGGAAGACGTCGAAATTATGAAGGATATGGGTTTAGATGCTTTCAGGTTGTCAATATCTTGGTCTCGAATATTACCTAATGGGAAAGTGAGTGGGG GAGTGAACAAAGCTGGAGTCACTTACTACAACAACCTTATCAATGAACTTTTATCTAATGGCATCAAACCCTTTGTGACCCTTTTCCATTGGGATCTTCC TCAAGCTTTGGAAGATGAATATGAAGGCTTCCTCAGTTCAAAAATAGCGAGTGATTTTGGTGCATATGCTGATGTTTGCTTCAAACTATTTGGGGATCGG GTGAAGCACTGGATCACATTGAACGAACCGCTCACGTTTACCCAAGCCGGGTACGCGGCCGGGGACATGGCACCTGGGCGTTGCTCGAAATCGATTAATA GCAACTGTACGAAAGGCGACTCTTCAACGGAACCGTATTTGGTATCGCATAACCAGCTTCTTGCTCATGCGGCTGCCGTAAAGGTGTACAGAGAAAAGTA TCAGGCAAAGCAAAAGGGTATAATAGGAATTACATTGGTGTCGCCTTGGTATGTCCCTTATTCAAAGTCCAAACATGATCTTGAGGCTCGTCAACGGGCA CTTGATTTCGCTTACGGATGGTTTATGGATCCATTGACGAAAGGAGAGTATCCGGAATCGATGAGATCGTTGGTCGGAAATCGACTGCCCAAGTTCTCAA AGGACGAATCAGACCTGGTCAAAGGGTCATTTGACTTTCTAGGGTTGAACTACTATACCTCCAATTATGCAGCCAACGTGCAGAGCTCTGGCAATGCTGT GAATGCGACGTCGTACTTTACGGATTCTCGAGCCAATCTTTCCTCTTCGAGGAATGGAGTAGCTATCGGTCCGAAGGCGGCTTCCCCGTGGCTGTACATT TACCCAAAAGGAATCCAAGATCTTGTGTTGTACACGACGAAAAAGTATGACAACCCACTCATTTACATTACTGAAAACGGGGTCGATGAGGCAAACAACG AGGAGCAGAGTCTGGAACATGCTCTTGCCGACGTAACGAGGATTTATTATTACCATCGACATCTCGATTTTCTCAATAAGGCAATCCAGAAAGGAGCAAA TGTGAAAGGATACTTTGCATGGTCACTCCTCGATAATTTCGAGTGGGCTGCTGGATATTCGGTTCGATTCGGAATCAATTACGTGGACTACAAAGACGGG TTGAAAAGATACCCGAAACATTCGGCCCATTGGTTCCGTAGCTTTCTCAAAAGAGAATAG
AA sequence Show only first row Show all	>Lus10031235 pacid=23150990 polypeptide=Lus10031235 locus=Lus10031235.g ID=Lus10031235.BGIv1.0 annot-version=v1.0 MTTLVSTVVLFLLAVSFPAEGTPSFSAGFNVSPSSAVAPPFNRSSFPSGFLFGTASSAYQYEGAATEGGRGPSIWDTFTKIPGKIIDGSSGDVAIDEYNR YKEDVEIMKDMGLDAFRLSISWSRILPNGKVSGGVNKAGVTYYNNLINELLSNGIKPFVTLFHWDLPQALEDEYEGFLSSKIASDFGAYADVCFKLFGDR VKHWITLNEPLTFTQAGYAAGDMAPGRCSKSINSNCTKGDSSTEPYLVSHNQLLAHAAAVKVYREKYQAKQKGIIGITLVSPWYVPYSKSKHDLEARQRA LDFAYGWFMDPLTKGEYPESMRSLVGNRLPKFSKDESDLVKGSFDFLGLNYYTSNYAANVQSSGNAVNATSYFTDSRANLSSSRNGVAIGPKAASPWLYI YPKGIQDLVLYTTKKYDNPLIYITENGVDEANNEEQSLEHALADVTRIYYYHRHLDFLNKAIQKGANVKGYFAWSLLDNFEWAAGYSVRFGINYVDYKDG LKRYPKHSAHWFRSFLKRE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10031235 [exp]	0	1
AT2G33420			Protein of unknown function (D...		Lus10011785 [exp]	1.4	0.9687
					Lus10010270 [exp]	1.7	0.9745
AT1G20870			HSP20-like chaperones superfam...		Lus10007642 [exp]	3.0	0.9658
AT5G51950			Glucose-methanol-choline (GMC)...		Lus10015012 [exp]	4.2	0.9566
AT5G06740			Concanavalin A-like lectin pro...		Lus10021060 [exp]	4.5	0.9447
AT4G37710			VQ motif-containing protein (....		Lus10011555 [exp]	4.9	0.9453
AT1G68765		IDA	INFLORESCENCE DEFICIENT IN ABS...		Lus10034385 [exp]	5.3	0.9626
AT5G45020			Glutathione S-transferase fami...		Lus10026012 [exp]	5.9	0.9590
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10014227 [exp]	7.7	0.9416
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10041831 [exp]	8.7	0.9349

Compare expression of checked genes

Lus10031235 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.