Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 802 / 0 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 620 / 0 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 606 / 0 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 603 / 0 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 533 / 2e-177 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 490 / 3e-160 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031809 [exp] 1400 / 0 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 1069 / 0 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 994 / 0 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031810 [exp] 965 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 909 / 0 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 872 / 0 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 841 / 0 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 807 / 0 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10035232 [exp] 805 / 0 AT3G45140 584 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015400 [exp] 885 / 0 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 882 / 0 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 874 / 0 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 838 / 0 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 836 / 0 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.010G057100 [exp] 656 / 0 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 647 / 0 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.008G178000 [exp] 647 / 0 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.003G067600 [exp] 613 / 0 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.005G032600 [exp] 515 / 4e-170 AT1G55020 1284 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10031236 pacid=23151102 polypeptide=Lus10031236 locus=Lus10031236.g ID=Lus10031236.BGIv1.0 annot-version=v1.0 ATGTTGAAACCAAACAACAGCACCAGCCGCCGGCCAGTTCTCTTCACTCCGGCGAAGAAGACTTCCCTTGCCGGCCGTGGACACAATACCAACTATGTAC ACTCACATCTTCCCTTATTACCTTCCACGTTACTGACGTCATCGAGTAACAATATCCTACTAGCCACGACTAGTAACAATATCCTGCCGGCAGCGGCGAT TCTTGGTTCGGCGACGTTGACGGAGCAGGCGGTGAAAGTCAAAGCGGTCGTGACGGTTAAACAGCCGGCGGAGATGCTTTCCAAAATAGGGATAGGGATG GAAGACATCTCTAGCTTCTTCGGTAAAACCTTCCAGCTCCAGGTCGTTAGCGCCCAACTTGATCCCGAGACGGGACTAGAGCAACCGAGTGTGCAAGCAC ACGCGAAGAAGGTGAGCGAGCAAGGAGCGGAGATCAAGTACGAGGCAGAGTTCAAAATCCCCGAAGAGTTCGGAGAAATCGGTGCGGTTGTGGTTGTGAA CGAGCACCCTAATGAGATGTTCCTCAAGGATATTGTTCTTCATGGCTTCGCTCTTGGACCCATCAATGTTCCTTGCGACTCTTGGGTCCATCCCAAGTCC CAAAACTCTAACAAGAGGATCTTCTTCACCACTAAGTCGGAGACGAGGATCGGCGGAGAATTCTACGTGCCGCGAGACGAGGAGTTCTCGGAGGTGAAGG ACCAATGCTTCAATCGGAATACCTTCTCGTCAGTGCTCCGTGCGGTGGTGCCCGCGGTGGAGACGCTTTTGATTGATTCCGATCTAGGATTTCCTCACTT CGCTGCCATTGATAACCTGTTTGATCAAGGACTCGACCTTCCTCCCCGCGCAGCAGATGCTCCCTGGACGGATATCCTCCCAAGGCTGATCAGAACCACC GCTGAACGATCCAATGACATGTTGCAGTTTGAGCTCCCTACCACCGTGGAGAGGGATAGATTCTTCTGGTTGAAGGATGAACAGTTTGGCAGGCAGACTC TTGCTGGAGTGAATCCTTGCTGCATTGAATTGGTCAAGGTACTATTGCGTGCAAAGCTTATCAATGGAGTTAAAGAACGAAGATCACAGTGGAAAAGTGG AAATGAATGTTTGCAGGAATGGCCATTGAAGAGTAAGCTTGATCCAGAGGTCTATGGTCCACCAGAATCTGCAATTACCACTGCAGTTGTTGAAAGGCAA ATCAGAGGTTTCTCGACAGTTGAGGAGGCTATAGAGAAGAAGAAGCTATTCGTCCTGGATTACCATGATCTGTTCTTGCCATTTGTGAGCACTGTAAGGG AGCAAGGAGGAACCGTACTATACGGGTCGAGGGCATTGTTCTTTCTGACCCCTATTGGCACGTTGAAACCGGTTGCGATCGAGCTCACCAGACCACCAAT GGATGGCAAGCCACAGTGGAAACAAGTCTACACGCCGACGCTTTGTTCTTCCACCGATCAGTGGCTCTGGAAGCTGGCCAAAACACACGTCCTTGCCAAT GACGTTAGCTATCATCAACTAGTTAGCCATTGGCTGAGAACGCATTGCTGCACAGAACCTTACATAATCGCAACGAATCGCCAACTTAGTGCCATGCACC CAATCTATAGACTCTTGCTGCCTCACTTCCGTTATACGATGGAGATCAATGCTTTAGCTCGCCAAGCTCTGATCAATGCAGGTGGCATCATTGAAACTTG TTTTGCTCCTCTCAAGTATGCCATCCAGCTCAGTTCTGCAATCTACGGCCAAAACTGGCGATTCGACTGCGAAGCACTTCCAAAGGACCTAATCAGGAGG GGGATGGCCTTTGAAGATCCTTCAGCCCCGCATGGCCTGAAACTAACAATCGCGGACTATCCCTACGCGAGCGACGGGCTAATAATGTGGGACGCATTGG AGCAATGGGTGACCGACTATGTAGACCGATACTATCCCGACGCAACCCTCGTGGCCTCCGATGCTGAGCTTCAAGCCTGGTGGATCGAGATTCGCACGGT CGGCCATCAGGACAAGAAAGACGAGCCCTGGTGGCCGAAGCTGAACACCCCGCGGGACCTCGTGGGGATCCTCACGACTATAATGTGGGTCACGTCAGGC CACCACGCTGCGGTGAACTTCGGACAGTATGCGTTTGGAGGCTACCTACCCAACAGGCCGACAATCGGAAGGAAGAAGATGCCCGACGAAGATGGAACTG ACGAAGAGTGGAAGAGGTTCCTCGACAAACCTGAAGCGGTGCTCCTCGATATGTACCCGTCGCAGCTCCAGGCGTCGAAGGTGATGGCCGTTCTGGACGT TTTATCGGGGCACTCGATCGAGGAAGAGTACATGGGGAAGGAGATGGAGCAGGCGTGGGCTGACGACCCGGTGATCAAATCAGCTTTCGAGAAGTTCAGC GGGAGGATGATGGAGCTGGAAGGCGAGATCGATGCTCGAAATGCGAATCCGAAGCTGAAGAACCGAAATGGTGCTGGTGTTCTTCCTTACGAACTTCTGA AGCCGTTTTCTGAGCCTGGCGTCACTGGGAAAGGTGTTCCTTACAGTATCTCTATCTAA
AA sequence Show only first row Show all	>Lus10031236 pacid=23151102 polypeptide=Lus10031236 locus=Lus10031236.g ID=Lus10031236.BGIv1.0 annot-version=v1.0 MLKPNNSTSRRPVLFTPAKKTSLAGRGHNTNYVHSHLPLLPSTLLTSSSNNILLATTSNNILPAAAILGSATLTEQAVKVKAVVTVKQPAEMLSKIGIGM EDISSFFGKTFQLQVVSAQLDPETGLEQPSVQAHAKKVSEQGAEIKYEAEFKIPEEFGEIGAVVVVNEHPNEMFLKDIVLHGFALGPINVPCDSWVHPKS QNSNKRIFFTTKSETRIGGEFYVPRDEEFSEVKDQCFNRNTFSSVLRAVVPAVETLLIDSDLGFPHFAAIDNLFDQGLDLPPRAADAPWTDILPRLIRTT AERSNDMLQFELPTTVERDRFFWLKDEQFGRQTLAGVNPCCIELVKVLLRAKLINGVKERRSQWKSGNECLQEWPLKSKLDPEVYGPPESAITTAVVERQ IRGFSTVEEAIEKKKLFVLDYHDLFLPFVSTVREQGGTVLYGSRALFFLTPIGTLKPVAIELTRPPMDGKPQWKQVYTPTLCSSTDQWLWKLAKTHVLAN DVSYHQLVSHWLRTHCCTEPYIIATNRQLSAMHPIYRLLLPHFRYTMEINALARQALINAGGIIETCFAPLKYAIQLSSAIYGQNWRFDCEALPKDLIRR GMAFEDPSAPHGLKLTIADYPYASDGLIMWDALEQWVTDYVDRYYPDATLVASDAELQAWWIEIRTVGHQDKKDEPWWPKLNTPRDLVGILTTIMWVTSG HHAAVNFGQYAFGGYLPNRPTIGRKKMPDEDGTDEEWKRFLDKPEAVLLDMYPSQLQASKVMAVLDVLSGHSIEEEYMGKEMEQAWADDPVIKSAFEKFS GRMMELEGEIDARNANPKLKNRNGAGVLPYELLKPFSEPGVTGKGVPYSISI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031236 [exp]	0	1
AT5G57685		LSB1, ATGDU3	LESS SUSCEPTIBLE TO BSCTV 1, A...		Lus10008909 [exp]	2.4	0.8141
AT1G04380			2-oxoglutarate (2OG) and Fe(II...		Lus10009240 [exp]	5.0	0.8165
					Lus10020451 [exp]	8.7	0.8148
AT4G12480		PEARLI 1 1, PEA...	EARLY ARABIDOPSIS ALUMINUM IND...		Lus10036494 [exp]	8.9	0.7665
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	12.3	0.8050
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10034380 [exp]	12.7	0.7698
AT4G13230			Late embryogenesis abundant pr...		Lus10011889 [exp]	14.1	0.8014
					Lus10021851 [exp]	15.3	0.7998
					Lus10008791 [exp]	16.5	0.7998
					Lus10012440 [exp]	17.7	0.7998

Compare expression of checked genes

Lus10031236 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.