Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 441 / 5e-149 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G17420 374 / 9e-123 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G67560 370 / 1e-121 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 369 / 7e-121 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 334 / 3e-108 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 329 / 7e-106 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031810 [exp] 637 / 0 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 509 / 7e-176 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 509 / 3e-175 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031809 [exp] 498 / 1e-173 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 501 / 1e-172 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 480 / 8e-166 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10002547 [exp] 477 / 8e-163 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 469 / 1e-159 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 457 / 4e-150 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015500 [exp] 488 / 2e-167 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.017G046200 [exp] 484 / 3e-165 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 481 / 1e-164 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 471 / 8e-161 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 465 / 3e-158 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.008G178000 [exp] 400 / 5e-133 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G057100 [exp] 399 / 3e-132 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 383 / 3e-126 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.003G067600 [exp] 363 / 1e-121 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.013G022000 [exp] 339 / 6e-110 AT1G55020 1311 / 0.0 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase
Representative CDS sequence Show only first row Show all	>Lus10031237 pacid=23150983 polypeptide=Lus10031237 locus=Lus10031237.g ID=Lus10031237.BGIv1.0 annot-version=v1.0 ATGCACCCTATCAACAGACTCTTGCAGCCTCACTTCCGATACACCATGGAGATCAACTCTCTAGCTCGCCAAGCTCTGATCAATGCAGATGGCATCATTG AAAGAGCCTTCTCTCCTCTCAAATACTCGATGCAGCTCAGCTCTGCAGTCTACAATCAATCTTGGCGCTTCGACTACGAGGCGCTTCCCAAGGACTTAGT AAGGCGAGGAATGGCTGTTGAAGACCCATCAGCTCCACACGGCCTAAAGCTAACAATCGAAGACTACCCATACGCAAGCGACGGCTTAATCCTGTGGGAC GCATTAAAGCAATGGATCACAGACTACGTCAACCGCTACTATCCAGACCCAACTTCCATCTCCAAAGACACAGAGCTTCAATCCTGGTGGACCGAGATCC GCACCGTCGGGCATCAGGACAAGAAGGACGAGCCCTGGTGGCCGAACCTCAAAACCCCATTCGACCTCGTCGAGATCCTCTCGACGATTGCCTGGGTAGC ATCGGCTCAGCACGCAGCAGTCAACTTCGGACAGTACCCCTACGGCGGCTACTTCCCCAACAGGCCTTCGATCGCCAGAACGAACATGCCAGACGAGGAT CCGAGGGACGAAGTATCGTGGGAAGAGAAGTTCATGGTGAAGCCCGAATCGGTGATGCTCGAGATGTTCCCCTCGCAGTTTCAGGCCTCGGTTGTGATGG CTGTGCTTGACGTCCTGTCAAGCCATTCTGAGGACGAAGAGTACATTGGACAGGTGATGGAGCCCGCGTGGAGGGATGATGCTGTGGTCAAGGCGGCTTT CGAGAAGTTCCGAGGGAGGCTGGAGGTGCTCGAATCGGTCATCGATGAACGGAATGGGAATTCGAAGCTGAGGAATAGGAATGGTGCTGGGGTTCCTCCT TATGAGCTTCTGAAGCCTGTTTCTGAGCCTGGTGTTACTGGGAAAGGTGTTCCTTACAGTATCTCTATATAA
AA sequence Show only first row Show all	>Lus10031237 pacid=23150983 polypeptide=Lus10031237 locus=Lus10031237.g ID=Lus10031237.BGIv1.0 annot-version=v1.0 MHPINRLLQPHFRYTMEINSLARQALINADGIIERAFSPLKYSMQLSSAVYNQSWRFDYEALPKDLVRRGMAVEDPSAPHGLKLTIEDYPYASDGLILWD ALKQWITDYVNRYYPDPTSISKDTELQSWWTEIRTVGHQDKKDEPWWPNLKTPFDLVEILSTIAWVASAQHAAVNFGQYPYGGYFPNRPSIARTNMPDED PRDEVSWEEKFMVKPESVMLEMFPSQFQASVVMAVLDVLSSHSEDEEYIGQVMEPAWRDDAVVKAAFEKFRGRLEVLESVIDERNGNSKLRNRNGAGVPP YELLKPVSEPGVTGKGVPYSISI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	0	1
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10019801 [exp]	1.0	0.9193
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	1.4	0.9093
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	4.2	0.8779
AT5G39110			RmlC-like cupins superfamily p...		Lus10035293 [exp]	5.1	0.8374
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10038141 [exp]	5.7	0.8618
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	6.0	0.8766
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10035289 [exp]	6.2	0.8966
					Lus10036864 [exp]	6.7	0.8506
AT3G23240	AP2_ERF	ERF1, ATERF1	ethylene response factor 1 (.1...		Lus10022015 [exp]	7.0	0.8779
AT2G38870			Serine protease inhibitor, pot...		Lus10018784 [exp]	7.3	0.8486

Compare expression of checked genes

Lus10031237 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.