Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 226 / 1e-68 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G67560 159 / 1e-44 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G72520 149 / 6e-41 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G17420 143 / 5e-39 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G55020 137 / 4e-37 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 126 / 4e-33 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031810 [exp] 402 / 5e-135 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031236 [exp] 306 / 6e-99 AT3G45140 805 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 300 / 3e-96 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 271 / 2e-85 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 265 / 8e-83 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10031809 [exp] 251 / 5e-79 AT3G45140 753 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002545 [exp] 248 / 2e-75 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 233 / 6e-72 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10032087 [exp] 196 / 6e-58 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G046200 [exp] 277 / 2e-87 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 275 / 9e-87 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 257 / 3e-80 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 251 / 7e-78 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 232 / 9e-71 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.008G178000 [exp] 179 / 2e-51 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G057100 [exp] 173 / 1e-49 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.001G167700 [exp] 163 / 7e-46 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.003G067600 [exp] 148 / 4e-41 AT1G17420 1000 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.010G089500 [exp] 129 / 3e-34 AT3G22400 1267 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase
Representative CDS sequence Show only first row Show all	>Lus10031238 pacid=23151134 polypeptide=Lus10031238 locus=Lus10031238.g ID=Lus10031238.BGIv1.0 annot-version=v1.0 ATGTTTTTTCTCCCGCTCAAATTTTTGGCAGATCCGAAATCGGAGTCGAGGAGCAGCGATTTCTACGTACCACGTGACGAGGAGTTCTCCGATGTGAAGC AGTCGTCGTTTTCGTACAAGACGCTGTCGTCGGTACTGCGGGCGGTGATTCCCACGGTGGAGACGCTGTTCATCGATCCGGACCTTGGGTTTCCTAATTT TACCGCCATTGATTCGTTGTTCGATCAAGGTCTCAACCTGCCTCCTCGCACCGCGGATTCGTCTTGGACGGACATCCTCCCCAGGCTCATTAGGTCCGTT GCATCTCGCTCCAACGATGTCCTGCAGTTTGAGGTTCCTGAGGCTATGGAGAGGGACAGATTTTTCTGGCTGAAAGATGAGCAGTTTGGCAGGCAGACTC TTGCTGGTGTTAATCCTTGTAGCATTGAGTTGGTCAAGGAATGGCCATTGAAGAGCAAGCTTGACCCGAATGTTTATGGTCCGCCAGAATCTGCAATCAC CACTGAGATCGTTGAGAAGCAAATTAAAGGATTCATGACTGTTGATGAGGCTATGAAGCAAAAGAAGCTCTTCATCATAGACTACCATGATCTGCTGCTG CCATTTGTGAACCTTGTGAGGAAGCTGGAAGGACTTGTCTCACACCGAGGAATGGCTATGGAAGCTAGCCAAAGCTCACGTCCTTGCACATGA
AA sequence Show only first row Show all	>Lus10031238 pacid=23151134 polypeptide=Lus10031238 locus=Lus10031238.g ID=Lus10031238.BGIv1.0 annot-version=v1.0 MFFLPLKFLADPKSESRSSDFYVPRDEEFSDVKQSSFSYKTLSSVLRAVIPTVETLFIDPDLGFPNFTAIDSLFDQGLNLPPRTADSSWTDILPRLIRSV ASRSNDVLQFEVPEAMERDRFFWLKDEQFGRQTLAGVNPCSIELVKEWPLKSKLDPNVYGPPESAITTEIVEKQIKGFMTVDEAMKQKKLFIIDYHDLLL PFVNLVRKLEGLVSHRGMAMEASQSSRPCT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	0	1
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	1.4	0.9093
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	2.4	0.8823
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10001775 [exp]	8.3	0.8475
AT5G51160			Ankyrin repeat family protein ...		Lus10034255 [exp]	11.4	0.8080
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	12.5	0.7686
AT1G01490			Heavy metal transport/detoxifi...		Lus10024672 [exp]	13.0	0.7442
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039513 [exp]	13.3	0.7397
AT2G36760		UGT73C2	UDP-glucosyl transferase 73C2 ...		Lus10014404 [exp]	14.8	0.6926
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006553 [exp]	15.5	0.7597
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Lus10038141 [exp]	23.0	0.7876

Compare expression of checked genes

Lus10031238 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.