Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45140 173 / 9e-49 ATLOX2, LOX2 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) AT1G17420 172 / 2e-48 ATLOX3, LOX3 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) AT1G72520 170 / 1e-47 ATLOX4, LOX4 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G67560 142 / 7e-38 ATLOX6, LOX6 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) AT1G55020 129 / 2e-33 ATLOX1, LOX1 ARABIDOPSIS LIPOXYGENASE 1, lipoxygenase 1 (.1) AT3G22400 120 / 2e-30 ATLOX5, LOX5 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031810 [exp] 402 / 4e-134 AT3G45140 959 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10039094 [exp] 266 / 2e-82 AT3G45140 946 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10032087 [exp] 243 / 4e-74 AT3G45140 894 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10002547 [exp] 203 / 2e-59 AT3G45140 971 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10041646 [exp] 202 / 6e-59 AT3G45140 939 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10027379 [exp] 192 / 6e-56 AT1G72520 867 / 0.0 Arabidopsis thaliana lipoxygenase 4, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Lus10002545 [exp] 184 / 3e-52 AT3G45140 991 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Lus10008113 [exp] 175 / 2e-49 AT1G17420 1396 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Lus10013151 [exp] 174 / 4e-49 AT1G17420 1397 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G046200 [exp] 238 / 7e-72 AT3G45140 979 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015500 [exp] 236 / 2e-71 AT3G45140 975 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.009G022400 [exp] 222 / 3e-66 AT3G45140 1008 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015400 [exp] 217 / 2e-64 AT3G45140 990 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G015300 [exp] 213 / 4e-63 AT3G45140 943 / 0.0 ARABIODOPSIS THALIANA LIPOXYGENASE 2, lipoxygenase 2 (.1) Potri.001G167700 [exp] 162 / 9e-45 AT1G17420 1444 / 0.0 Arabidopsis thaliana lipoxygenase 3, lipoxygenase 3 (.1) Potri.008G178000 [exp] 153 / 1e-41 AT1G67560 1155 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.010G057100 [exp] 147 / 1e-39 AT1G67560 1144 / 0.0 Arabidopsis thaliana lipoxygenase 6, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G018200 [exp] 137 / 4e-36 AT3G22400 791 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1) Potri.014G177200 [exp] 135 / 1e-35 AT3G22400 786 / 0.0 Arabidopsis thaliana lipoxygenase 5, PLAT/LH2 domain-containing lipoxygenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00305 [flax] [poplar] Lipoxygenase Lipoxygenase CL0321 [flax] [poplar] PLAT PF01477 [flax] [poplar] PLAT PLAT/LH2 domain
Representative CDS sequence Show only first row Show all	>Lus10031239 pacid=23151025 polypeptide=Lus10031239 locus=Lus10031239.g ID=Lus10031239.BGIv1.0 annot-version=v1.0 ATGCAGCCCGGCGCTCTCTCCGGCGGCCACACGGCGGTCCCAACCGTCCCCATTAACGGCGGCGGCCCTAGTACTACCATACTTTCCTTCCCTTCCACGT CGCCGACGTCGTTGTCCACTGCCCAGAAGAGGAATAGCTTTAACGGCGTGGCTAACGGAGGTAGGTCATCAGGGAAGAATAATATCGGCGTTAGTTCTGT TGCTGCTGTTTCGAGTAGTATGGTGCCGGGACAGACGACGGTGCAAGTTAAGGCGGTTGTGACCGTTAAACAGACCGGAGGGTTGCTCTCCAGCATCGGG ATTGGTCACGAAGACATCTCCGATTGGTTTGGTCGAACCTTCCAGCTTCACCTCATCGGTGCCCACCTTCATTCCGAGACGGGATTAGAGAAGGCAACGA TAAAATCATATGCGAAAAAGGCAACAGAGGAGAACGGAGATATCAAATATGAGGCCAAGTTTGAAGTTCCTATTGATTTCGGAGACATCGGTGCAGTTAT GGTCGAAAATCAACACAATTACGAGATGTTTCTCAAGGACATTGTCCTCGAGAGCTCTCTTGTCGACGATCCGATTAACATCCCATGTGACTCATGGATT CAACCCACGTCCCAGAATCTACGTCGCAGAATCTTCTTCACCACCAAGTCGTACTTGCCGTCCGATACGCCGGACGGGCTCACCAGGTACAGGGAAGAAG AGCTGAACGCTCTACGCGGCGATGGCAAAGGAGAGCGCAAGCAGGGCGAAAGAATCTACGAGTATGATGTCTACAACGATCTCGGCAACCCTGACAGCAA CCCCGATCTCGCCAGGCCCGTTCTCGGCGGGAAACAGAATCCCTATCCTCGCCGGATCCGGTAG
AA sequence Show only first row Show all	>Lus10031239 pacid=23151025 polypeptide=Lus10031239 locus=Lus10031239.g ID=Lus10031239.BGIv1.0 annot-version=v1.0 MQPGALSGGHTAVPTVPINGGGPSTTILSFPSTSPTSLSTAQKRNSFNGVANGGRSSGKNNIGVSSVAAVSSSMVPGQTTVQVKAVVTVKQTGGLLSSIG IGHEDISDWFGRTFQLHLIGAHLHSETGLEKATIKSYAKKATEENGDIKYEAKFEVPIDFGDIGAVMVENQHNYEMFLKDIVLESSLVDDPINIPCDSWI QPTSQNLRRRIFFTTKSYLPSDTPDGLTRYREEELNALRGDGKGERKQGERIYEYDVYNDLGNPDSNPDLARPVLGGKQNPYPRRIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Lus10031239 [exp]	0	1
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10024152 [exp]	1.0	0.9126
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10039513 [exp]	2.0	0.8889
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031238 [exp]	2.4	0.8823
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10031237 [exp]	6.0	0.8766
AT3G19090			RNA-binding protein (.1)		Lus10027925 [exp]	8.7	0.8075
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10021345 [exp]	10.2	0.7357
AT2G38870			Serine protease inhibitor, pot...		Lus10018784 [exp]	10.9	0.7909
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Lus10036880 [exp]	16.4	0.7111
AT5G42020		BIP2, BIP	luminal binding protein, Heat ...		Lus10017022 [exp]	21.0	0.6939
AT3G57270		BG1	"beta-1,3-glucanase 1", beta-1...		Lus10014109 [exp]	21.2	0.6892

Compare expression of checked genes

Lus10031239 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.