Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01410 434 / 4e-152 NHL domain-containing protein (.1) AT2G16760 90 / 4e-20 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G47370 79 / 4e-16 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G28660 54 / 1e-08 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031811 [exp] 650 / 0 AT2G01410 452 / 3e-159 NHL domain-containing protein (.1) Lus10015347 [exp] 82 / 5e-17 AT2G16760 374 / 6e-130 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10001126 [exp] 78 / 2e-15 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G156300 [exp] 518 / 0 AT2G01410 431 / 3e-151 NHL domain-containing protein (.1) Potri.006G111600 [exp] 474 / 3e-168 AT2G01410 375 / 5e-129 NHL domain-containing protein (.1) Potri.014G120300 [exp] 95 / 1e-21 AT2G16760 393 / 1e-137 Calcium-dependent phosphotriesterase superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031240 pacid=23150959 polypeptide=Lus10031240 locus=Lus10031240.g ID=Lus10031240.BGIv1.0 annot-version=v1.0 ATGTCTCCGATCACGATCCTTGCCTTAATCCTCCTCTTCACATCGCCGATTCTTTCAACAGCCAGAACCCCCCATCTCATCAAATTCCGATCCCCAAATC TCTACCCAGAAGGCCTCGCCTACGATTCCTCCGCCCAGCACTTCATCGTCGGATCTCTCCGAAACCGCACGATCCACTCCGTCTCCGATGCCGGCGTCGT TGAAACCCTAATCTCCGACCCTTCCCTCCCTCCAAACTCTACAATCCTAGGATTAGCTATAGACACGGTCAACAAACGCCTCCTCGCCGCTGTCCACTCC ATGCCCCCACTCCCGATCTTCAACGCCCTCGCCGCCTACGACCTCAAATCCCGCCGCCGCATCTTCCTCTCCCTCCTCCCCGACGCCGATTCCTCCTCCT CCACCCACCGCCCAGTCGCCAACGCAGTGGCCGTCGATTTCAAAGGCAACGCATACGTCACCAACTCTTTAGGCACAGCGGACGGCAACTTCATCTGGAA AGTCAATCCAGACGGAGAGGCATCGATCTTCTCCAGATCTCCTCTCTTCAACCGATTCCCGGTCGATCGAGACCTCCCGTACAGCAACTCGGGGCTCAAC GGCATCGCTTACAACAGCAAAGGATACCTCCTCGTGATCCAGAGCAATACAGGGAAGATGTTCAAAGTCGACGAGGAAGACGGTACTGCAAGGAGGGTTT TACTGCCGTTGGATCTGATCGACGGCGATGGGATCGCGGTCAGGAAGAGAGACGGCGTCGTTTTGGTGGTGTCGCACAAGAAGCTGTGGTTCCTGAAGAG CGAAGACAGCTGGTCTGAGGGAGTGGTGTATGACGAGACTGCCCTCGAGGAGGAAGGGTTCGCGACTGCGGTGGCTACGGCGGGGGAGGACAGGGCGTAT GTGTTATATGGGAGCGTGATGGAGGGTATTTTGGGGAATGGTGGAAATAGGGAGTGGTTTGAGATTGAGGAGATAAGGTCAAGGAAAGAAGGGGAGGATG AGAATATTTGGCTGTATGTTATGGTTGGGCTGGGCCTGGCCTACTTTTTGTTTTGGAGATTTCAGATGAAGCAGCTAGTTAGGAATATGGACAAAAAGAT CACTTGA
AA sequence Show only first row Show all	>Lus10031240 pacid=23150959 polypeptide=Lus10031240 locus=Lus10031240.g ID=Lus10031240.BGIv1.0 annot-version=v1.0 MSPITILALILLFTSPILSTARTPHLIKFRSPNLYPEGLAYDSSAQHFIVGSLRNRTIHSVSDAGVVETLISDPSLPPNSTILGLAIDTVNKRLLAAVHS MPPLPIFNALAAYDLKSRRRIFLSLLPDADSSSSTHRPVANAVAVDFKGNAYVTNSLGTADGNFIWKVNPDGEASIFSRSPLFNRFPVDRDLPYSNSGLN GIAYNSKGYLLVIQSNTGKMFKVDEEDGTARRVLLPLDLIDGDGIAVRKRDGVVLVVSHKKLWFLKSEDSWSEGVVYDETALEEEGFATAVATAGEDRAY VLYGSVMEGILGNGGNREWFEIEEIRSRKEGEDENIWLYVMVGLGLAYFLFWRFQMKQLVRNMDKKIT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01410			NHL domain-containing protein ...		Lus10031240 [exp]	0	1
AT2G01410			NHL domain-containing protein ...		Lus10031811 [exp]	1.7	0.8853
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10022199 [exp]	2.4	0.8974
AT1G70000	MYB		myb-like transcription factor ...		Lus10036678 [exp]	4.2	0.8573
AT1G12440			A20/AN1-like zinc finger famil...		Lus10008912 [exp]	6.2	0.9001
AT4G14430		PEC12, IBR10, E...	DELTA\(3\), DELTA\(2\)-ENOYL C...		Lus10021207 [exp]	7.5	0.8816
AT1G51700	DOF	ADOF1, AtDof1. ...	DOF zinc finger protein 1 (.1)		Lus10027797 [exp]	8.0	0.8380
AT5G65030			unknown protein		Lus10014340 [exp]	9.6	0.8267
AT5G58950			Protein kinase superfamily pro...		Lus10011173 [exp]	13.2	0.8693
AT3G57340			Heat shock protein DnaJ, N-ter...		Lus10019421 [exp]	15.2	0.8655
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Lus10030214 [exp]	17.0	0.8311

Compare expression of checked genes

Lus10031240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.