Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20780 1014 / 0 RHL3, HYP6, BIN3, ATTOP6B ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031812 [exp] 1291 / 0 AT3G20780 1016 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1) Lus10031813 [exp] 360 / 3e-122 AT3G20780 279 / 3e-91 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G211000 [exp] 1089 / 0 AT3G20780 1122 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1) Potri.T085401 [exp] 730 / 0 AT3G20780 798 / 0.0 ROOT HAIRLESS 3, ELONGATED HYPOCOTYL 6, BRASSINOSTEROID INSENSITIVE 3, topoisomerase 6 subunit B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0025 [flax] [poplar] His_Kinase_A PF02518 [flax] [poplar] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CL0329 [flax] [poplar] S5 PF09239 [flax] [poplar] Topo-VIb_trans Topoisomerase VI B subunit, transducer
Representative CDS sequence Show only first row Show all	>Lus10031241 pacid=23151007 polypeptide=Lus10031241 locus=Lus10031241.g ID=Lus10031241.BGIv1.0 annot-version=v1.0 ATGGATACCGGAGGCAGCAGTGAAACGCCGGCGGGGCAGCCGACGAAGAAAGGCAAAGCCAGAGCTCCCAAGAAGGCAACAGAGAGCGTTCTCAAGCAGA AATCCCCAGCTGAGTTCTTCGCGGAGAACAAGAATATTGCTGGTTTTGATAATCCAGGGAAGTCCTTATACACTACGGTGAGGGAGCTGGTGGAGAATTC GTTGGATTCAGCTGAATCAATCTCCGAACTTCCTGTTGTGGAGATCACAATCGAAGAGATTGGGAAAAGTAAGTTCAACTCCATGATTGGACTTATTGAT CGGGAGCGAGTTGATGCCCAACTCTATGACGATTACGAAACAGTAAAGGAACGCGAGAGAAGATTGGTGAAGGAGGCTCGTGCCCAGGAAATCCAAGCGA AGAATGCTGCTCTTGGAAAGAAAGTTAAAGAGCAGTCTGCTGCAAAGGGCATGAAGGGTCGAGGCGAGGCTTCATTTTATAGAGTGACATGCAAGGATAA TGGGAAAGGAATGCCACACGATGACATTCCAAATATGTTCGGACGAGTTCTATCTGGGACTAAGTATGGCCTCAAACAGACGCGTGGAAAGTTTGGTCTC GGCGCAAAAATGGCGCTGATATGGTCCAAAATGAGCACAGGGCTTCCTATCGAAATATCATCTTCAATGAAGAGGCAGAGTTATGTTTCCTTCTGCCGGC TAGACATAGACATCCATAGGAACACACCTCATGTTCATCTACATGAAAAGAGGGAGAATGATAACGGGTGGCATGGAGCTGAGATTCAAGTGGTTATTGA AGGCAACTGGACGACATACCGTTCGAAGATATTGCATTACATGAGGCAAATGGCTGTTATCACTCCGTACGCTCAATTTCTATTCAGATTCATATCGGAG GCATCAGATAAAAATGTGACCGTGAAATTTGCTCGGAGAACTGATGTTATGCCTCCAGTTCCTCCTGAGACAAGGCATCACCCGTCATCTGTCGATATTC TGCTGATAAAACGCCTCATCGCAGAAACCTCAAAGCCAACCCTTTTGCAGTTTTTGCAGCACGAATTTGTCAATATTGGGAAATCGCATGCTGAGCGTTT AATTGGGGAAATGGGGCCGGACTTCACTCTGAAAATGGCTGTCAAAACCTTGACCGATCAGCAGATAGTTCGCATACACCAGTTGTTCCGTCAAGCCAAG TTTGATGACCCTACTGGAGATGGTTTGAACATCTTCCGGTTTGCGAATCGGATCCCACTTCTGTTCGAGCAAGGCGCTGATGTCGTTACGAGGACTGCAC TTAAGAGAATAAACTGGGGGACTTACAAGATGAACCAGAGCCAGGATAAAGTAGGCGTGTTCGTGAGCATCGTCAGCACGAAGATCCCGTTCAAGGGGAC TGGGAAGGAATACATTGGAGACGATATCAAGGAGATTGCTACTGCTGTCAAGTTGGCCATTCAGCAGTGCTGCAATCAGCTGAAGGCGAAAATCGTGAAG CGAAATCAGGCACGCGAACAACAAGAACGGAAACGAAACTTAAGCAGGTATATTCCGGATGCCACGAATGCTATATACGACGTGCTGCGAGAGATGTCGC AGGTGCATGCATCGAAGAAGAGGAAGTTTGACGAGGAAGATGCAGAACTGCTTTCCAAAGTTTCGTCTCGAGTGATAACGAAGGAGACACTCAAGGAAAA GCTTGCTCAACACGTCGAACAGGTCGACTATGAGATGGCGCTGGAATACGCGACACAGAGTGGAGTGAGCGAGGAGCCAAGAGAGGAAGTGTACATCAAG CCGTTTGATGCTGATGATAGCAACGGGAAGTTCGTGGACTTCCGCAGTCCGGCGTTTGTGTTCCGACTCTTTCTGTGA
AA sequence Show only first row Show all	>Lus10031241 pacid=23151007 polypeptide=Lus10031241 locus=Lus10031241.g ID=Lus10031241.BGIv1.0 annot-version=v1.0 MDTGGSSETPAGQPTKKGKARAPKKATESVLKQKSPAEFFAENKNIAGFDNPGKSLYTTVRELVENSLDSAESISELPVVEITIEEIGKSKFNSMIGLID RERVDAQLYDDYETVKERERRLVKEARAQEIQAKNAALGKKVKEQSAAKGMKGRGEASFYRVTCKDNGKGMPHDDIPNMFGRVLSGTKYGLKQTRGKFGL GAKMALIWSKMSTGLPIEISSSMKRQSYVSFCRLDIDIHRNTPHVHLHEKRENDNGWHGAEIQVVIEGNWTTYRSKILHYMRQMAVITPYAQFLFRFISE ASDKNVTVKFARRTDVMPPVPPETRHHPSSVDILLIKRLIAETSKPTLLQFLQHEFVNIGKSHAERLIGEMGPDFTLKMAVKTLTDQQIVRIHQLFRQAK FDDPTGDGLNIFRFANRIPLLFEQGADVVTRTALKRINWGTYKMNQSQDKVGVFVSIVSTKIPFKGTGKEYIGDDIKEIATAVKLAIQQCCNQLKAKIVK RNQAREQQERKRNLSRYIPDATNAIYDVLREMSQVHASKKRKFDEEDAELLSKVSSRVITKETLKEKLAQHVEQVDYEMALEYATQSGVSEEPREEVYIK PFDADDSNGKFVDFRSPAFVFRLFL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031241 [exp]	0	1
AT3G20780		RHL3, HYP6, BIN...	ROOT HAIRLESS 3, ELONGATED HYP...		Lus10031812 [exp]	1.0	0.9489
AT5G66750		CHR01, CHA1, SO...	SOMNIFEROUS 1, DECREASED DNA M...		Lus10041735 [exp]	8.7	0.9234
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10019248 [exp]	9.2	0.9109
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	12.6	0.9146
AT4G24790			AAA-type ATPase family protein...		Lus10033035 [exp]	13.4	0.8969
AT4G24710			P-loop containing nucleoside t...		Lus10019473 [exp]	14.0	0.9164
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10021962 [exp]	14.1	0.8890
AT5G58930			Protein of unknown function (D...		Lus10018206 [exp]	17.7	0.9015
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	18.5	0.9050
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	19.3	0.8966

Compare expression of checked genes

Lus10031241 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.