Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20790 478 / 4e-169 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G18620 115 / 2e-27 CHR17 chromatin remodeling factor17 (.1.2) AT3G06400 115 / 3e-27 CHR11 chromatin-remodeling protein 11 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031814 [exp] 616 / 0 AT3G20790 423 / 3e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10033967 [exp] 120 / 7e-29 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10012813 [exp] 119 / 2e-28 AT5G18620 952 / 0.0 chromatin remodeling factor17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085501 [exp] 532 / 0 AT3G20790 488 / 3e-174 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G210900 [exp] 532 / 0 AT3G20790 488 / 3e-174 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G205600 [exp] 117 / 4e-28 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.010G021400 [exp] 117 / 5e-28 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0139 [flax] [poplar] GADPH_aa-bio_dh PF02894 [flax] [poplar] GFO_IDH_MocA_C Oxidoreductase family, C-terminal alpha/beta domain CL0063 [flax] [poplar] NADP_Rossmann PF01408 [flax] [poplar] GFO_IDH_MocA Oxidoreductase family, NAD-binding Rossmann fold
Representative CDS sequence Show only first row Show all	>Lus10031242 pacid=23151145 polypeptide=Lus10031242 locus=Lus10031242.g ID=Lus10031242.BGIv1.0 annot-version=v1.0 ATGAATTTCTCTGCAGCTGTCAACAAAGATGAGCTGCTTCAAACGGTGAGATTTGGTGCTGAAATGGTTTTCAGCTCAAAGGATAGTACAATCACAGATG AGGACGTTGACAGAATCATTGCTAAAGGAGAAGAAGCAACAGCTGAGCTTGATGCTAAGATGAAGAAATTTACAGACGATGCGATTAAATTCAAGATGGG CGACGATCGCAGTAATCTTCAATTCGTTTCCGGCGAGGTTTCAGCAATGGCGAGTTCACCAAACATCGTGATTCTTGGAGCTGGCATCTTCGTCAAGACT CAATACATTCCCAGATTGGCTGAGATCTCCAATCTCATCGTTCTCCGCGCCATCTGGAGCCGATCCGAGGAGTCGGCGATGGCAGCTGTGGAGATTGCGC GTAGGCATTTCCCTGACGTGGAGTGCAAATGGGGAGACAAGGGACTTGATGAGATTCTCAACGACGAGTCCATCATTGGCGCTGCTGTTGTTCTTGCTGG ACAAACTCAGGTTGAGATGTCCTTGAAGCTATTGAAGGCTGGGAAGCATGTTCTTCAGGCGTCAAATGGGATAGAAGCTGCACTCGCAAGCTACAAATCC CTTTGTGCTCAAACCCCCGGGCAGCCGATATGGGCTGTGGCAGAGAACTATAGGTTTGAACCTGCTTTTGAAGAGGGGAAAAAGTTCATGGATGAAGTGG GAGATTTGATCAACGTCCAAGTCATCATTGAAGGATCAATGAATAGTTCTAATCCCTACTTCTCAAGTTCTTGGAGACGAAATTTCACGGGAGGTTTCAT TCTCGACATGGGGGTGCACTTCATTGCAGGACTCAGGATGCTTGTTGGGTGTGAGGTGGTCACAGTGTCTGCCAGAACCTCTCACGTGGATTCCATCTTA CCTCCACCGGACAACATATCCGCAGTCTTCCATCTAGAGAATGGATGTTCTGGAATTTTCGCAATGGTTGTCTCTTCAAGGTCACCTAAGGTAGTCTGGC GAGTTGTTGGACTGAAAGGCACTCTGCAAATTCAGCGTGGCAGCGAAGACGGACGCCATGGTTACCTGGTATCATTTTTCGGTGGTGATGGACAAAGCAA GAGCAGCTTCCATGCATTTAGTGGTGTAACGGAGGAGTTGAAGATCTTCTTCAATGACATAACGCAGGCTTCCTTAAAGAAGGATAGCGGGTACGAAGCT GAGCCGCGGCTCACATTCTTGGAAGGCGCTCGAGATGTGGCTCTTCTGGACGCAATGCTCGAGTCCGGGCGCAAAAATGGAGCCCTGGTCCAGGTGAAGC AGTTTTAA
AA sequence Show only first row Show all	>Lus10031242 pacid=23151145 polypeptide=Lus10031242 locus=Lus10031242.g ID=Lus10031242.BGIv1.0 annot-version=v1.0 MNFSAAVNKDELLQTVRFGAEMVFSSKDSTITDEDVDRIIAKGEEATAELDAKMKKFTDDAIKFKMGDDRSNLQFVSGEVSAMASSPNIVILGAGIFVKT QYIPRLAEISNLIVLRAIWSRSEESAMAAVEIARRHFPDVECKWGDKGLDEILNDESIIGAAVVLAGQTQVEMSLKLLKAGKHVLQASNGIEAALASYKS LCAQTPGQPIWAVAENYRFEPAFEEGKKFMDEVGDLINVQVIIEGSMNSSNPYFSSSWRRNFTGGFILDMGVHFIAGLRMLVGCEVVTVSARTSHVDSIL PPPDNISAVFHLENGCSGIFAMVVSSRSPKVVWRVVGLKGTLQIQRGSEDGRHGYLVSFFGGDGQSKSSFHAFSGVTEELKIFFNDITQASLKKDSGYEA EPRLTFLEGARDVALLDAMLESGRKNGALVQVKQF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031242 [exp]	0	1
AT3G20790			NAD(P)-binding Rossmann-fold s...		Lus10031814 [exp]	1.0	0.8432
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10042570 [exp]	13.0	0.7808
AT1G77580			Plant protein of unknown funct...		Lus10000186 [exp]	13.9	0.7868
AT1G12460			Leucine-rich repeat protein ki...		Lus10006675 [exp]	19.1	0.7967
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10011157 [exp]	24.1	0.7810
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10001733 [exp]	24.4	0.7978
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Lus10026923 [exp]	32.2	0.7863
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10028196 [exp]	39.7	0.7767
AT3G43590			zinc knuckle (CCHC-type) famil...		Lus10029311 [exp]	43.7	0.7638
AT1G57600			MBOAT (membrane bound O-acyl t...		Lus10013485 [exp]	46.2	0.7713

Compare expression of checked genes

Lus10031242 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.