Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12970 978 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G57880 937 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 900 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 789 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 782 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 749 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 722 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G04150 657 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G20080 636 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G61300 630 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012026 [exp] 923 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10016280 [exp] 923 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 783 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 779 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 779 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 730 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 712 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 684 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031816 [exp] 601 / 0 AT4G11610 513 / 1e-176 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T085601 [exp] 998 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 981 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 974 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 934 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 930 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 818 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.009G065600 [exp] 803 / 0 AT5G06850 1308 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G105400 [exp] 796 / 0 AT4G11610 1567 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.016G049300 [exp] 788 / 0 AT5G06850 1355 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.003G125900 [exp] 787 / 0 AT4G11610 1543 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain CL0484 [flax] [poplar] Peroxisome PF08372 [flax] [poplar] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Lus10031244 pacid=23150952 polypeptide=Lus10031244 locus=Lus10031244.g ID=Lus10031244.BGIv1.0 annot-version=v1.0 ATGATGCAGAAGCCACCACAGTCAGTGGACTTTGCACTCAAGGAGACCTCACCGAAGATTGGTGCAGGAGCGATAACAGGCGACAAGCTCTCCTCCACCT ATGATCTCGTGGAGCAAATGCAGTATCTTTACGTCCGTGTGGTGAAAGCCAGGGATCTCCCATCCAAGGACGTCACAGGAAGCTGTGATCCATATGTTGA AGTGAAGCTCGGTAACTACAAAGGCATCACTAGGCATTTCGAGAAGAAGTCGAACCCTGAATGGAACCAAGTCTTCGCCTTTTCAAAGGAAAGAATCCAA GCTTCGGTTCTGGAAGTGACAGTCAAAGACAAAGATGTTGTCATGGATGACCTTATTGGCAGGATGTTGTTCGATCTCAATGACATCCCGAAACGTGTCC CACCGGATAGTCCTTTAGCTCCTCAGTGGTATAGGCTGGAAGATCGAAAGGGTGATAAAGTGAAGAATGGTGAGCTTATGTTGGCTGTTTGGATGGGGAC ACAAGCTGATGAAGCATTCTCGGACGCTTGGCATTCCGATGCAGCAAGTGTCGGTCCTGATGGAGTTGCGAACATTCGTTCCAAGGTGTATCTCTCTCCG AAGCTTTGGTATGTTAGGGTGAACGCGATCGAAGCGCAGGACTTGTTGCCTCATGATAAGACAAGGTTCCCTGAAGCTTATGTTAAAGTCACACTTGGAA ATCAAGCAATGAGGACTAGGATTTGCCCTAGTAAGACCATTAATCCCATGTGGAACGAGGATTTAGTGTTTGTAGTTGCTGAACCGTTCGAGGAACCTAT TATCTTAACCGTGGAGGACCGGTTAGGTCCTGGAAAAGATGAAACAATGGGGAGATGTGTTATTCCATTGCAACTTGTCCAGAGAAGGCTCGACCATAAA CCTGTCAACACGAGATGGTATAATCTTGAAAAGCATATAATCGTAGATGGCGAAAAGAAGGAAGTCAAATTCGCTAGCAGGATTCATCTTAGGGTGTGTT TGGAAGGAGGGTATCATGTTCTTGATGAATCCACACATTACAGTAGTGACTTGAGGCCAACTGCCAAACAGTTATGGAGACCAAGCATTGGAATCTTGGA AGTCGGAATCCTAAGTGCTATAGGATTGTCTCCTATGAAGGCGAAAGACGGGAGGGGGACCACCGATGCTTACTGTGTGGCGAAATATGGTTCAAAATGG GTTAGGACTAGGACGATCGTGGACTGCTTCGCTCCGAAATGGAACGAGCAGTACACGTGGGAGGTTTTCGATCCTTGCACCGTGATCACCTTTGGTGTTT TCGACAACGGACATGTCAATGGAGGGTCGGGGAAGGATGCTAGGATTGGTAAGGTCAGGATAAGGCTATCGAATCTTGAAGCGGATCGAGTTTACACACA TGCTTACCCGCTATTGGCGTTACACCCTTCCGGTGTGAAGAAAATGGGCGAGGTTCAGTTAGCTGTGAGGTTCACTTGTTCATCTTTGATCAACATGCTT CACATGTACTCTCACCCTTTGCTCCCCAAGATGCACTACATCCACCCGTTGTCGGTGATGCAGCTTGACATCCTTAGGCACCAGGCGATGCAGATCGTGT CCATGAGGCTGAACCGGGCAGAGCCACCGCTGAGGAAAGATGTTGTCGAGTACATGCTCGATGTCGACTCGCACATCACTGGGCATCCTCCAAATATGGA CACCAGACTGTCTCACGCTGATGCTTGTCACCCTGATGAACTCGATGAGGAGTTCGACACTTTCCCGACGAGCAGGCCAGCGGACATTGTCAGGATGAGG TACGATCGGCTGAGGAGCATCGCGGGGAAAGTGCAGACCGTGGTGGGGGATTTGGCGACGCAAGGTGAGAGGTTCCAGTCGTTGCTGAGCTGGAGGGACC CGAGAGCTACTACTTTGTTTGTGACGTTCTGTTTGATTGCTGCCATTGTGCTTTACGTGACTCCTTTCCAGGTTGTTGGACTTCTAATGGGGATCTATGT GTTGAGACATCCGAGGTTTCGACACAAGCTTCCTTCTGTTCCTCTCAACTTCTTCAGGAGGTTGCCTGCAAGATCAGACAGCATGCTTTGA
AA sequence Show only first row Show all	>Lus10031244 pacid=23150952 polypeptide=Lus10031244 locus=Lus10031244.g ID=Lus10031244.BGIv1.0 annot-version=v1.0 MMQKPPQSVDFALKETSPKIGAGAITGDKLSSTYDLVEQMQYLYVRVVKARDLPSKDVTGSCDPYVEVKLGNYKGITRHFEKKSNPEWNQVFAFSKERIQ ASVLEVTVKDKDVVMDDLIGRMLFDLNDIPKRVPPDSPLAPQWYRLEDRKGDKVKNGELMLAVWMGTQADEAFSDAWHSDAASVGPDGVANIRSKVYLSP KLWYVRVNAIEAQDLLPHDKTRFPEAYVKVTLGNQAMRTRICPSKTINPMWNEDLVFVVAEPFEEPIILTVEDRLGPGKDETMGRCVIPLQLVQRRLDHK PVNTRWYNLEKHIIVDGEKKEVKFASRIHLRVCLEGGYHVLDESTHYSSDLRPTAKQLWRPSIGILEVGILSAIGLSPMKAKDGRGTTDAYCVAKYGSKW VRTRTIVDCFAPKWNEQYTWEVFDPCTVITFGVFDNGHVNGGSGKDARIGKVRIRLSNLEADRVYTHAYPLLALHPSGVKKMGEVQLAVRFTCSSLINML HMYSHPLLPKMHYIHPLSVMQLDILRHQAMQIVSMRLNRAEPPLRKDVVEYMLDVDSHITGHPPNMDTRLSHADACHPDELDEEFDTFPTSRPADIVRMR YDRLRSIAGKVQTVVGDLATQGERFQSLLSWRDPRATTLFVTFCLIAAIVLYVTPFQVVGLLMGIYVLRHPRFRHKLPSVPLNFFRRLPARSDSML

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12970			Calcium-dependent lipid-bindin...		Lus10031244 [exp]	0	1
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	1.7	0.9564
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	3.5	0.9471
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	3.9	0.9355
AT1G74680			Exostosin family protein (.1)		Lus10002060 [exp]	4.5	0.9228
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10034082 [exp]	6.9	0.8934
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	10.0	0.9179
AT4G32330			TPX2 (targeting protein for Xk...		Lus10002012 [exp]	14.7	0.9140
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10001291 [exp]	16.5	0.9014
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10041472 [exp]	16.7	0.8828
AT5G51430		EYE	EMBRYO YELLOW, conserved oligo...		Lus10031731 [exp]	16.7	0.8845

Compare expression of checked genes

Lus10031244 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.