Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73730 482 / 5e-165 EIL AtEIL3, ATSLIM, SLIM1, EIL3 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) AT3G20770 368 / 6e-120 EIL AtEIN3, EIN3 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) AT2G27050 363 / 1e-118 EIL AtEIL1, EIL1 ETHYLENE-INSENSITIVE3-like 1 (.1) AT5G10120 290 / 1e-91 EIL Ethylene insensitive 3 family protein (.1) AT5G21120 281 / 1e-87 EIL EIL2 ETHYLENE-INSENSITIVE3-like 2 (.1) AT5G65100 281 / 4e-87 EIL Ethylene insensitive 3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031817 [exp] 961 / 0 AT1G73730 555 / 0.0 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Lus10014331 [exp] 288 / 8e-91 AT5G65100 351 / 1e-116 Ethylene insensitive 3 family protein (.1) Lus10041709 [exp] 279 / 5e-87 AT5G65100 358 / 6e-119 Ethylene insensitive 3 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G015900 [exp] 676 / 0 AT1G73730 494 / 8e-170 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.003G210500 [exp] 652 / 0 AT1G73730 516 / 5e-178 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1) Potri.004G197400 [exp] 367 / 1e-119 AT3G20770 724 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.008G011300 [exp] 363 / 2e-117 AT3G20770 560 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.009G159200 [exp] 362 / 2e-117 AT3G20770 704 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.010G247500 [exp] 360 / 1e-116 AT3G20770 578 / 0.0 ETHYLENE-INSENSITIVE3, Ethylene insensitive 3 family protein (.1) Potri.001G015966 [exp] 252 / 3e-80 AT1G73730 239 / 6e-76 ARABIDOPSIS THALIANA SULFUR LIMITATION 1, ETHYLENE-INSENSITIVE3-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04873 [flax] [poplar] EIN3 Ethylene insensitive 3
Representative CDS sequence Show only first row Show all	>Lus10031245 pacid=23151006 polypeptide=Lus10031245 locus=Lus10031245.g ID=Lus10031245.BGIv1.0 annot-version=v1.0 ATGGGTGAATTGGAGGAGATCGCCGCCGATATCTGCTCGGAGATTGATGCAGATGAACTCAAGTGTGACAATCTAGCTGAGAAAGATGTCAGCGACGAGG AAATTGAACCGGAAGAATTGGAGAGGCGAATGTGGAAGGATCGAGTTAAGCTCCAAAGGATTAAAGAAAGGCAGAGGATATCAGCACAGCAAGCTGCCGA AAAGCAGAAGCCGAAACACACATCGGATCAAGCTAAAAGGAAGAAGATGTCCAGAGCTCAAGATGGAATCCTCAAGTACATGCTGAAGCTAATGGAGGTC TGCCAAGCTCGAGGATTCGTGTATGGTATCATACCGGAAAAGGGCAAGCCTGTGAGTGGTGCTTCTGATAACATTCGAGCTTGGTGGAAGGAAAAGGTTA AGTTTGACAAGAACGGTCCGGCAGCTATAGCAAAGTACGAAGCCGAGTGTTTGGCTATGAACGAGGGAGATAACGCTCGACAGGGGAATTCACAGAGTGT TCTTCAGGATCTTCAGGATGCTACATTGGGATCCTTGCTGTCATCTCTGATGCAACACTGTGATCCTCCTCAAAGGAAGTATCCTTTGGAAAAGGGGGTT CCTCCGCCTTGGTGGCCGACTGGAAATGAAGATTGGTGGGGGAAATTGGGGTTGCCGAGTGGTCAAACTCCACCTTATAAGAAACCACACGACCTGAAGA AGGTGTGGAAAGTTGGAGTGCTTACGGCTGTTATAAAGCACATGTCACCGAACATTGCAAAAATACGGAGGCATGTTCGCCAGTCGAAATGCTTGCAGGA TAAGATGACGGCGAAGGAGAGTGCGATCTGGCTAGCAGTATTGAGTAGGGAGGAGTCTGTAATTAGGCAGCCTAGCAGTGATAATGGTACATCCGGGATA ACTGAGGTGCCTCGAGGCGGTCGAAAGAAGCAAGCTGCAGTTAGTGATGACAGTGATTACGATGTAGAAGGTGTTGATGATGGTGTGGGATCCGTATCCT CCAATGATAGCATGAGCAATCAGCCTATGGATGTGGAGCCACTCGGTAATTTGAGAGATGACTCTCCCCATCCAGTTCAGAAGAAAGAGAGAAGAGAGAA GCCGCGTAAGAGGAAGAGACCGCGAGATAAATCAAAGGATTCCGAACAACAGCCAGGGCCATCGACTAATGATGGTCATTTCTTACTTGAGCAGAGAGCT AGTTTACCTGACATGGATCACAGCCATATACAGCCTCTTGAACCTCAGATGCATGCTGTTGACCCTGAAATCAATACAAATGTCCCTACAATGCCTTTAG GGGAAGGGTTGGAGGGTGAACCAAACTTTATTGCTCCAGAATTTAACTACCTACCCAACATTCCACTTGGCTCTGGAGAAAATATACGCCTAGACGGGAG ACCACAGCTTTATCCGTTGGCACAGAGCTCGGATATGTTTCACGGCTCGAGCTACGACTTTTATGCTCCAACTGTCAACTTTGGACCTGCTCATGGTGTG GAACAACAGACTCACTTGCCTGTGGATGCATCTCATATCAGACAAGAGGGTGATGGTTTCCAAGTACCGGCACTACCTATGAACGGAAACGAGATACCGG GAGGAGACCTGCAGAATTTCGCCAAAGACATATTTCCTAGCGGGCAGGATAGATATTTGGGGTCTCCTTTCGACAGTGTGCCGTCGGATTTCGGAGATTT CAGCAGTCCGTTCGACTTTGACATCGACATTGATCTGCTCAAGTGCTATGGAGCATAA
AA sequence Show only first row Show all	>Lus10031245 pacid=23151006 polypeptide=Lus10031245 locus=Lus10031245.g ID=Lus10031245.BGIv1.0 annot-version=v1.0 MGELEEIAADICSEIDADELKCDNLAEKDVSDEEIEPEELERRMWKDRVKLQRIKERQRISAQQAAEKQKPKHTSDQAKRKKMSRAQDGILKYMLKLMEV CQARGFVYGIIPEKGKPVSGASDNIRAWWKEKVKFDKNGPAAIAKYEAECLAMNEGDNARQGNSQSVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGV PPPWWPTGNEDWWGKLGLPSGQTPPYKKPHDLKKVWKVGVLTAVIKHMSPNIAKIRRHVRQSKCLQDKMTAKESAIWLAVLSREESVIRQPSSDNGTSGI TEVPRGGRKKQAAVSDDSDYDVEGVDDGVGSVSSNDSMSNQPMDVEPLGNLRDDSPHPVQKKERREKPRKRKRPRDKSKDSEQQPGPSTNDGHFLLEQRA SLPDMDHSHIQPLEPQMHAVDPEINTNVPTMPLGEGLEGEPNFIAPEFNYLPNIPLGSGENIRLDGRPQLYPLAQSSDMFHGSSYDFYAPTVNFGPAHGV EQQTHLPVDASHIRQEGDGFQVPALPMNGNEIPGGDLQNFAKDIFPSGQDRYLGSPFDSVPSDFGDFSSPFDFDIDIDLLKCYGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031245 [exp]	0	1
AT2G05830			NagB/RpiA/CoA transferase-like...		Lus10008417 [exp]	5.2	0.8487
AT1G23820		SPDS1	spermidine synthase 1 (.1.2)		Lus10030861 [exp]	8.2	0.8455
AT2G37110			PLAC8 family protein (.1)		Lus10023176 [exp]	11.1	0.8403
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10032188 [exp]	14.4	0.8202
AT4G15490		UGT84A3	UDP-Glycosyltransferase superf...		Lus10019809 [exp]	18.5	0.8415
AT1G73730	EIL	AtEIL3, ATSLIM,...	ARABIDOPSIS THALIANA SULFUR LI...		Lus10031817 [exp]	22.1	0.8093
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Lus10030629 [exp]	24.2	0.8213
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10010988 [exp]	24.5	0.8262
AT1G77670			Pyridoxal phosphate (PLP)-depe...		Lus10014710 [exp]	35.9	0.8120
AT3G01170			Ribosomal protein L34e superfa...		Lus10005234 [exp]	41.2	0.7813

Compare expression of checked genes

Lus10031245 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.