Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G016100 [exp] 38 / 0.0005 AT3G24225 39 / 4e-05 EMBRYO SURROUNDING REGION 19, CLAVATA3/ESR-RELATED 19 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031246 pacid=23150997 polypeptide=Lus10031246 locus=Lus10031246.g ID=Lus10031246.BGIv1.0 annot-version=v1.0 ATGATCTCTGAATCAAAGTTGCTAACTTTCTTTGTGATATTGATGTCGATGGCTCGACATTGCACTTCCTTGTTTCTCGATCAGAAGATTGCAGGAGCAG CAGGAAGATACATAGTCCAGAGGAGTCTGGTATCCTCGATGCTTATCTCGACTGTTGAGGATCTTCATGAACGAAACGTTCAATCTTACGCAAACATTCA GCCAGAGACTCCGATTGAATTGCAGCGGATACAAAAATGGCCGTTCTGTTATTCGACTGATACTGGCAGTATGGTCTCACATGGGGTACCTGCAAATCTG CAATTACTGTTGCTATATCTCATCATTACCTGCCACATGGCAGCTACTCCCCAGCCTTCGATTTGGCAAATCCGTACGAGGATACTAGCTAGCAGGAATC CCAAGCTCACAGAATCAGGTTTGCAATCAGAAGATGGGAAATCTGTACAAGTTGGAAGACTCATAGCCAGAGGAGCCGCCAGGAAGGATCTTGGAGGGAA AATGGCGATGGATTCTGCAAGGGAAGTGCCAACTGGGCCGGATCCGCTCCACCACCATAGCTATCCTTCAAGACCCTGA
AA sequence Show only first row Show all	>Lus10031246 pacid=23150997 polypeptide=Lus10031246 locus=Lus10031246.g ID=Lus10031246.BGIv1.0 annot-version=v1.0 MISESKLLTFFVILMSMARHCTSLFLDQKIAGAAGRYIVQRSLVSSMLISTVEDLHERNVQSYANIQPETPIELQRIQKWPFCYSTDTGSMVSHGVPANL QLLLLYLIITCHMAATPQPSIWQIRTRILASRNPKLTESGLQSEDGKSVQVGRLIARGAARKDLGGKMAMDSAREVPTGPDPLHHHSYPSRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10031246 [exp]	0	1
					Lus10040920 [exp]	5.5	0.8763
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10042328 [exp]	7.2	0.8778
AT3G09870			SAUR-like auxin-responsive pro...		Lus10023011 [exp]	15.5	0.8578
AT1G55680			Transducin/WD40 repeat-like su...		Lus10037252 [exp]	25.1	0.8595
AT4G13040	AP2_ERF		Integrase-type DNA-binding sup...		Lus10011836 [exp]	28.3	0.8337
AT3G23880			F-box and associated interacti...		Lus10036065 [exp]	31.5	0.8498
AT5G16800			Acyl-CoA N-acyltransferases (N...		Lus10013457 [exp]	32.9	0.8571
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10016999 [exp]	33.0	0.8604
AT3G14075			Mono-/di-acylglycerol lipase, ...		Lus10015680 [exp]	35.3	0.8601
AT3G61800			unknown protein		Lus10004000 [exp]	37.9	0.8535

Compare expression of checked genes

Lus10031246 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.