Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12890 499 / 3e-174 UDP-Glycosyltransferase superfamily protein (.1) AT2G15490 239 / 5e-73 UGT73B4 UDP-glycosyltransferase 73B4 (.1.2.3) AT2G15480 233 / 1e-70 UGT73B5 UDP-glucosyl transferase 73B5 (.1.2) AT2G36780 229 / 2e-69 UDP-Glycosyltransferase superfamily protein (.1) AT4G34131 226 / 2e-68 UGT73B3 UDP-glucosyl transferase 73B3 (.1) AT4G34138 224 / 2e-67 UGT73B1 UDP-glucosyl transferase 73B1 (.1) AT2G36770 223 / 1e-66 UDP-Glycosyltransferase superfamily protein (.1) AT2G36750 219 / 1e-65 UGT73C1, UGT72C1 UDP-glucosyl transferase 73C1 (.1) AT1G73880 212 / 6e-63 UGT89B1 UDP-glucosyl transferase 89B1 (.1) AT4G34135 212 / 7e-63 UGT73B2 UDP-glucosyltransferase 73B2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031819 [exp] 861 / 0 AT5G12890 506 / 4e-177 UDP-Glycosyltransferase superfamily protein (.1) Lus10025513 [exp] 385 / 6e-129 AT5G12890 348 / 9e-115 UDP-Glycosyltransferase superfamily protein (.1) Lus10003322 [exp] 241 / 7e-74 AT2G36780 468 / 9e-162 UDP-Glycosyltransferase superfamily protein (.1) Lus10034650 [exp] 237 / 2e-72 AT1G73880 484 / 6e-169 UDP-glucosyl transferase 89B1 (.1) Lus10003323 [exp] 236 / 9e-72 AT2G36800 493 / 2e-171 UDP-GLUCOSYL TRANSFERASE 73C5, don-glucosyltransferase 1 (.1) Lus10014079 [exp] 235 / 1e-71 AT4G34131 483 / 3e-168 UDP-glucosyl transferase 73B3 (.1) Lus10014437 [exp] 232 / 5e-70 AT2G36780 545 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Lus10014084 [exp] 226 / 3e-68 AT2G15490 445 / 2e-153 UDP-glycosyltransferase 73B4 (.1.2.3) Lus10019832 [exp] 224 / 3e-67 AT2G15490 494 / 1e-172 UDP-glycosyltransferase 73B4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G016300 [exp] 613 / 0 AT5G12890 543 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.003G210400 [exp] 527 / 0 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.001G016500 [exp] 515 / 0 AT5G12890 525 / 0.0 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077800 [exp] 380 / 2e-127 AT5G12890 387 / 3e-130 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077500 [exp] 378 / 9e-127 AT5G12890 389 / 9e-131 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077400 [exp] 375 / 2e-125 AT5G12890 381 / 1e-127 UDP-Glycosyltransferase superfamily protein (.1) Potri.017G077700 [exp] 335 / 3e-110 AT5G12890 332 / 1e-109 UDP-Glycosyltransferase superfamily protein (.1) Potri.009G098966 [exp] 252 / 4e-78 AT4G34131 588 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303000 [exp] 250 / 3e-77 AT4G34131 573 / 0.0 UDP-glucosyl transferase 73B3 (.1) Potri.001G303600 [exp] 247 / 4e-76 AT4G34131 568 / 0.0 UDP-glucosyl transferase 73B3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00201 [flax] [poplar] UDPGT UDP-glucoronosyl and UDP-glucosyl transferase
Representative CDS sequence Show only first row Show all	>Lus10031248 pacid=23151021 polypeptide=Lus10031248 locus=Lus10031248.g ID=Lus10031248.BGIv1.0 annot-version=v1.0 ATGGCTTCCGACCAAACCCACATTGTCTTGTTCCCTTTCATGGCGCAGGGCCACATCATCCCATTCCTAGCCCTCGCCCACCACATCGAACAAAGAACCA ACAAAGAAACAACATCAATCACTCTCATCAACACTCCACTCAACGTGAAGAAGCTCCGGTCATCGCTTCCTCCGGCATCCACCATCAACCTCCTGGAAAT CCCCTTCGAAAGCTCAGACCACCACGGCCTCCCTCCGGGGACCGAAAACACCGACGTCCTCCCTTACCCGCTCATCATCCGCCTCCTACAAGCCTCCACC ACCCTCCGCCCTGCCTTCAAATCCCTCGTCGTTGATCTCGCCGGCGACCGTCTCTGTATAATCGCTGACATGTTCTTTGGATGGACGGTCACCGTGGCCA AAGAGATCGGAGCTTGCCACGTTGTTTTCAGCGGGTCAGGTGGATTCGGATTGGCTTGCTATTACTCGATCTGGCTCTCGCTTCCTCATCGGAACTGCGA CGAAGAAACAAAAGGTGGGTACTTTCAGCTGGAGGATTTCCACGAGGCGTCGAGATTTCACAAGACTCAGCTGCCAACGAGCATTCTGGAAGCCGATGGA TCAGATCCTTGGTCTCTGTTTCAGAGGGAGAATCTAACGGCGTGGAGTGGCTCCGACGGGATTCTTTTCAACACAGCAGAAGAACTCGATTCGATCGGGC TGTGTTACTTCCGTCGGAAGTTAGGGATTCCAGCTTGGCCGATCGGACCCGTTTTGCTCAACAGAAATCTTTCAAATTCTGGTTCAGGCATTTCGTCGAA CAGTTGCAAGGCATGGCTGGACACAAAGCCAGAGAAGTCAGTTCTCTACGTATCGTTCGGATCTCAAAACACGATCAATCCATCTCAGATGATGCAATTA GGCAAAGCTTTAGCCTCCAGCAAGATAAATTTCATCTGGGCAGTACGGCCGCCGATCGGATTCGATATAAACTCCGATTTCCAGTCTAAAAAATGGCTGC CTGAAAATTTCGAGGAGAATACATCAGGGAGAGGGATACTAATAGAGAAATGGGCTCCGCAAGTTGAGATACTGTCTCATAAGGCGACGGGCGGGTTTCT GAGCCACTGCGGGTGGAACTCGGTGCTGGAGTCGTTGAGCTGCGGGGTACCGATGATCGGATGGGCGATGGCCGGGGAGCAGTTCTTCAACGTTAAGTTC TTGGAGGAGAATTTGGGGGTTTGCGTGGAAGTGGCGAGAGGGAAGAGCTGTGAAGTGAGGTGTGAAGAGATTGTGGAGAAGATCGAGGCTGTTATGAGTG GCGGTGAGATTAGGAGGAAGGCTTTGGAAGTGAAGGAGATGATGAGGAAGGCGGTGGATGAAGGCGACGGCGGGAGGAAGGGTTCGTCGTTGATTGCGGT GGATGAGTTTCTGACGGCGGCGATGACGTCAACGAAAGCGACAGCGGCGGATGTTTGA
AA sequence Show only first row Show all	>Lus10031248 pacid=23151021 polypeptide=Lus10031248 locus=Lus10031248.g ID=Lus10031248.BGIv1.0 annot-version=v1.0 MASDQTHIVLFPFMAQGHIIPFLALAHHIEQRTNKETTSITLINTPLNVKKLRSSLPPASTINLLEIPFESSDHHGLPPGTENTDVLPYPLIIRLLQAST TLRPAFKSLVVDLAGDRLCIIADMFFGWTVTVAKEIGACHVVFSGSGGFGLACYYSIWLSLPHRNCDEETKGGYFQLEDFHEASRFHKTQLPTSILEADG SDPWSLFQRENLTAWSGSDGILFNTAEELDSIGLCYFRRKLGIPAWPIGPVLLNRNLSNSGSGISSNSCKAWLDTKPEKSVLYVSFGSQNTINPSQMMQL GKALASSKINFIWAVRPPIGFDINSDFQSKKWLPENFEENTSGRGILIEKWAPQVEILSHKATGGFLSHCGWNSVLESLSCGVPMIGWAMAGEQFFNVKF LEENLGVCVEVARGKSCEVRCEEIVEKIEAVMSGGEIRRKALEVKEMMRKAVDEGDGGRKGSSLIAVDEFLTAAMTSTKATAADV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12890			UDP-Glycosyltransferase superf...		Lus10031248 [exp]	0	1
AT3G52760			Integral membrane Yip1 family ...		Lus10017054 [exp]	1.7	0.9574
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10014033 [exp]	2.2	0.9425
AT5G03080			Phosphatidic acid phosphatase ...		Lus10019919 [exp]	4.2	0.9408
AT2G36300			Integral membrane Yip1 family ...		Lus10021374 [exp]	4.5	0.9383
AT5G18520			Lung seven transmembrane recep...		Lus10025283 [exp]	6.0	0.9373
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	6.0	0.9566
AT3G07390		AIR12	Auxin-Induced in Root cultures...		Lus10025879 [exp]	6.0	0.9473
AT2G25680		MOT1	molybdate transporter 1 (.1)		Lus10016331 [exp]	8.7	0.9354
AT4G08810		SUB1	calcium ion binding (.1)		Lus10039175 [exp]	9.2	0.9398
AT1G22610			C2 calcium/lipid-binding plant...		Lus10009459 [exp]	11.8	0.9259

Compare expression of checked genes

Lus10031248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.