Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12900 432 / 1e-145 unknown protein AT1G12330 189 / 3e-53 unknown protein AT2G45260 71 / 1e-12 Plant protein of unknown function (DUF641) (.1) AT3G60680 59 / 8e-09 Plant protein of unknown function (DUF641) (.1) AT5G58960 56 / 8e-08 GIL1 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT1G53380 50 / 4e-06 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) AT3G14870 49 / 5e-06 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031820 [exp] 999 / 0 AT5G12900 454 / 2e-154 unknown protein Lus10024559 [exp] 186 / 4e-52 AT1G12330 479 / 3e-166 unknown protein Lus10032197 [exp] 182 / 1e-50 AT1G12330 476 / 2e-165 unknown protein Lus10004335 [exp] 177 / 7e-49 AT1G12330 468 / 7e-162 unknown protein Lus10028918 [exp] 168 / 7e-47 AT1G12330 399 / 3e-137 unknown protein Lus10001989 [exp] 67 / 1e-11 AT2G45260 671 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10030291 [exp] 66 / 3e-11 AT2G45260 668 / 0.0 Plant protein of unknown function (DUF641) (.1) Lus10016444 [exp] 63 / 6e-10 AT5G58960 635 / 0.0 GRAVITROPIC IN THE LIGHT, Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Lus10009284 [exp] 60 / 3e-09 AT3G60680 541 / 0.0 Plant protein of unknown function (DUF641) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G210200 [exp] 528 / 0 AT5G12900 603 / 0.0 unknown protein Potri.001G016600 [exp] 505 / 1e-173 AT5G12900 555 / 0.0 unknown protein Potri.001G117000 [exp] 200 / 3e-57 AT1G12330 465 / 1e-160 unknown protein Potri.003G115700 [exp] 200 / 4e-57 AT1G12330 503 / 2e-175 unknown protein Potri.002G145900 [exp] 74 / 1e-13 AT2G45260 692 / 0.0 Plant protein of unknown function (DUF641) (.1) Potri.014G067600 [exp] 59 / 2e-09 AT2G45260 462 / 3e-163 Plant protein of unknown function (DUF641) (.1) Potri.001G387700 [exp] 54 / 3e-07 AT1G53380 524 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.011G108000 [exp] 53 / 3e-07 AT1G53380 531 / 0.0 Plant protein of unknown function (DUF641) (.1), Plant protein of unknown function (DUF641) (.2), Plant protein of unknown function (DUF641) (.3) Potri.002G145000 [exp] 52 / 1e-06 AT3G60680 494 / 4e-172 Plant protein of unknown function (DUF641) (.1) Potri.014G066600 [exp] 51 / 2e-06 AT3G60680 522 / 0.0 Plant protein of unknown function (DUF641) (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031249 pacid=23151176 polypeptide=Lus10031249 locus=Lus10031249.g ID=Lus10031249.BGIv1.0 annot-version=v1.0 ATGGCGTCAGCCGCACTTGCTTCCTCCACCAACCAACTCTTCGACGACGGCGGAGGTGAACTAAACAGACATGAAATCCAATCCGCCATTGCTAAAGCCG TTGAGCTTCGAGCTTTACATGCTGCTCTGATTCAAGGAACCAACTCCAGCAGCCCTTCTTCTTCCCGCCCTCCTCTTCCCCACTTCTCCGCCGTCGACTA CCCTGTCTTCACTCCGCAGAGTTATGAAGATGAGCCCTTTCAAGGAACCCTTTATCCCCTTCCGGCGAGGTCAAGAGCAGCATCAGAAAGCTGGGATGAA TGCGATAATAATTACTCCTATTCTTGTAGAAACGTCGCCGCCGACGATCAGAAATCCGTCACCGGATCCTGCGCCGGCGGCAACAACAACATCGCCGTCG TCCTGCGCGCTTCTCCTGAGCTCTGCAAATCCGGCAGAGCTTTAAACCACTTAGCAGCAGACTTTAAATCCTCATCCTCCTCTTGCAACCGGTTCCGTCA AACCGGCGGCGAGTCTTCCATCGCCGCCGCCGCCGTGAACCATAAGAAAAACAGGGTCAATTCAAACATCGTCGTCCCGTTGACCGACTCCCACGCCTCC GTCCAGTCCCAGCCGAGGAGCAAAGGAGTGATGTCGTGGTTGTTTCCACGGCTGAGGAAGAATAAGAATAAGCAGCCCAACCACGAAGCTAATTTCTTTT CCTCGAATCGGACGGAATCCGACAATGCATCTCAGGCATTCGGCGGCGAATCGGGCGTTCTTTTCTCCATCGAGACGCTCAGGAGAGAGCTCAGGGAATC AAACGAGACGAGAGACGCAGCTTTGGCTGAAGTTTCGGAGACGAGGTCTTCTCTTGACTCTTTGAGGCAAAAGCTCGAACACCTGGAGGGCTACTGCGAA GAGCTAAAGAAATCTCTCAAATCCGCCGCCAGAGCCACCAGACGCAGCAAATCCATCGACGGCAACGCAGATGGGAATGTCAATTCGTCGAATTCGATCT TCCCGGTGAGCGATGAAGCAATGGTGGAAGGATTCCTACAGATGGCGTCGGAGTCAAGACTCTCAGTGAAGCAATTCTGCAAAACGCTAATCCTACAAAT CGACGAGTACGACACGGATTTGACTATCGGGAATTCGAATCGAGATTCCAATTCCAAATCGTTTCTCCACCAATTGGAATCGGCAATCAACGAGGCGATG TACCTGGACTTCGAGAACAGCGAGTTCCGACGGAACGGCTCGCCGAAGCATCTAGACAAGTCGCAGGATCGTCAGGCGAAGTTTCAATCGTTCGTTTCGT TGAGGAATCTGAGCTGGAACGAGGTTTTGAGGAAAGGGACGAAGTATTACAGCGAGGAGTTCAGCAAGTTCTGCGATCAGAAGATGAGCTGCGTGATCGC GGCGTTGAATTGGACGCGGCCGTGGCCGGAACAGCTGCTGCAGGCGTTCTTCGTGGCGGCGAAGTGTATATGGCTGCTGCATCTGCTGGCGTTCTCGTTC GTTCCGGCAATCGGGGTGATGAGGGTGGAGGAAGGTAGAGAGTTTGATCATGGGTATATGGAAGATATGGAGAGGCAGAGGGACGCCGGCGGCGGGAGGA AGGTTGTGAAGGCGATGGTGATGCCGGGGTTTTATGTCAACGGCGGGAGGGTTTTGAGGTGTAAGTGGAGGGAGGGGGGGTTTGGGTGTTTAGGTTTCTT TGAAGATAAAACAATACCGGCCATAACGGCTATGCCTCCGCTACTAGTTAGATTGTGTTTGATTCAAATTTCGAAATCATCTTCGAGATTGGATCAATGA
AA sequence Show only first row Show all	>Lus10031249 pacid=23151176 polypeptide=Lus10031249 locus=Lus10031249.g ID=Lus10031249.BGIv1.0 annot-version=v1.0 MASAALASSTNQLFDDGGGELNRHEIQSAIAKAVELRALHAALIQGTNSSSPSSSRPPLPHFSAVDYPVFTPQSYEDEPFQGTLYPLPARSRAASESWDE CDNNYSYSCRNVAADDQKSVTGSCAGGNNNIAVVLRASPELCKSGRALNHLAADFKSSSSSCNRFRQTGGESSIAAAAVNHKKNRVNSNIVVPLTDSHAS VQSQPRSKGVMSWLFPRLRKNKNKQPNHEANFFSSNRTESDNASQAFGGESGVLFSIETLRRELRESNETRDAALAEVSETRSSLDSLRQKLEHLEGYCE ELKKSLKSAARATRRSKSIDGNADGNVNSSNSIFPVSDEAMVEGFLQMASESRLSVKQFCKTLILQIDEYDTDLTIGNSNRDSNSKSFLHQLESAINEAM YLDFENSEFRRNGSPKHLDKSQDRQAKFQSFVSLRNLSWNEVLRKGTKYYSEEFSKFCDQKMSCVIAALNWTRPWPEQLLQAFFVAAKCIWLLHLLAFSF VPAIGVMRVEEGREFDHGYMEDMERQRDAGGGRKVVKAMVMPGFYVNGGRVLRCKWREGGFGCLGFFEDKTIPAITAMPPLLVRLCLIQISKSSSRLDQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12900			unknown protein		Lus10031249 [exp]	0	1
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Lus10029371 [exp]	5.7	0.8374
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10028345 [exp]	7.1	0.8211
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Lus10002547 [exp]	10.2	0.8194
AT5G65980			Auxin efflux carrier family pr...		Lus10001303 [exp]	19.1	0.8057
					Lus10025501 [exp]	22.6	0.8303
AT1G27385			unknown protein		Lus10015781 [exp]	24.2	0.8208
AT3G11550		CASP2	Casparian strip membrane domai...		Lus10004205 [exp]	27.2	0.8191
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	27.4	0.8110
AT1G02260			Divalent ion symporter (.1)		Lus10039251 [exp]	30.0	0.7728
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	30.5	0.8123

Compare expression of checked genes

Lus10031249 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.