Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12920 374 / 2e-125 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031823 [exp] 586 / 0 AT5G12920 346 / 5e-115 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G016800 [exp] 436 / 3e-150 AT5G12920 503 / 3e-175 Transducin/WD40 repeat-like superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031253 pacid=23150956 polypeptide=Lus10031253 locus=Lus10031253.g ID=Lus10031253.BGIv1.0 annot-version=v1.0 ATGGAAAAGGAGCTTGCTCGAATTAACCGGGAAGCTGGATCCCAATTACCGCCACCACCTTTCTTCTCTGCTCATGCAATCTTATTCCCAGGAAAATTTC CTCATAACTACCATGAGAATGGTCTCCCCTGTGTAACCCATTTTACTCTGGCTTGCGTAGTTTCTGAAATGGGGGGTTTGATTCAGGTGCTGTATGGTAC GCAGAATTACGTTCGAATGCATCCGGTCCCGAGGGCAGGGGTATCTGCTATTGAATTTGACTCTAAGGGTGTCTACTTAGCTTCAGTAACGAAATCCGGT TGTTTGACGATTCATGACTTTGAAGCTCTTTACTGTCACTCTAAGGATGTAGCATCTAAGAGGCCAGATTTACTGGTGTTAGATGTACAAGAAGATGAAG GCAAACTTGTGTTGCATCTCCAATTGGAAATCCAACTCTCTGCTGTACGCTGGAACCCTGCCAACCAAGATGAGGTTGCTTGCACTTCTTCGAAGAGAGA TGAAGTGCGTATTTTCGACATTGGTTATGTCTCTTCTCAGCCAGTTCAGGTGTTACGAGCAAGGAAGAATGTGAGCCTGTCTGGGTATCAAATTCATAAA GGGCTTACTGATATAGCGTTTAGTACTAATGATGGGTCAAGGTTGGTTAAGCAAACTTGTTATTCTTCCATGGCTTTTTGGATCAAAGAGTTATTTGCAT CTGATACAAAGGGGACAGTCAATGTATGGGATAGAAGACAGGGTGTTCTACCTTGTCTTGAGCTAAAAACCAATGATCAGTGTAACATCAATAGTATCCA ATTGAATGTGGATGATCAGACGGTTTTCGGGGCTGGTAGGCTCGGAGTAATTTACATGTGGGATCTCCGAGACGGAAGGGATTCGTCTGCTATTCAACGT CACAAAGAACAGGCATATCATTCGCCTGTAATGTCTTGGAAGCTAGATTCGGTGCTCAAGAAAATTGGATCCTTGAAGGCACAGTCCAACATAGTTGTTA GAGAAATACACTCAATCGATTTGAACCCGTGTTGCCCGTACCAGTTGGCCTTTCATCTCGACAACGAATGGTCGGGTGTTTTCGACATTAATAATCTTCG TGTGACGCATGTTCACTGCCCTCCTCCAGCTTGGTTAAACGACTCGAATAACGCGATCGACGACTTATGCTTCCGGATACCATCATGGCTGCACACTTAC TCTATGTACGCAGTCGGATCATCTGCTGAGAATGGGATTCATCTGTTAGACTTCTACCCCAACGTCACATCTTCTTGCCATGTCGATTACAGGTTAGCCT TCATACTTCAAAATGCGATTCATCTCTTCAACTCAGGTCTCTAA
AA sequence Show only first row Show all	>Lus10031253 pacid=23150956 polypeptide=Lus10031253 locus=Lus10031253.g ID=Lus10031253.BGIv1.0 annot-version=v1.0 MEKELARINREAGSQLPPPPFFSAHAILFPGKFPHNYHENGLPCVTHFTLACVVSEMGGLIQVLYGTQNYVRMHPVPRAGVSAIEFDSKGVYLASVTKSG CLTIHDFEALYCHSKDVASKRPDLLVLDVQEDEGKLVLHLQLEIQLSAVRWNPANQDEVACTSSKRDEVRIFDIGYVSSQPVQVLRARKNVSLSGYQIHK GLTDIAFSTNDGSRLVKQTCYSSMAFWIKELFASDTKGTVNVWDRRQGVLPCLELKTNDQCNINSIQLNVDDQTVFGAGRLGVIYMWDLRDGRDSSAIQR HKEQAYHSPVMSWKLDSVLKKIGSLKAQSNIVVREIHSIDLNPCCPYQLAFHLDNEWSGVFDINNLRVTHVHCPPPAWLNDSNNAIDDLCFRIPSWLHTY SMYAVGSSAENGIHLLDFYPNVTSSCHVDYRLAFILQNAIHLFNSGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12920			Transducin/WD40 repeat-like su...		Lus10031253 [exp]	0	1
AT1G54820			Protein kinase superfamily pro...		Lus10029948 [exp]	2.0	0.9409
AT1G73530			RNA-binding (RRM/RBD/RNP motif...		Lus10042293 [exp]	3.5	0.9225
AT3G02110		SCPL25	serine carboxypeptidase-like 2...		Lus10015382 [exp]	4.5	0.9373
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10009562 [exp]	5.2	0.9271
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10034072 [exp]	5.2	0.9385
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Lus10015067 [exp]	5.3	0.9063
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	6.3	0.9401
AT5G16030			unknown protein		Lus10033537 [exp]	6.3	0.9104
AT2G31580			tRNAHis guanylyltransferase (....		Lus10006155 [exp]	7.2	0.9383
AT1G68260			Thioesterase superfamily prote...		Lus10035152 [exp]	7.5	0.9303

Compare expression of checked genes

Lus10031253 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.