Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20820 224 / 6e-73 Leucine-rich repeat (LRR) family protein (.1) AT5G12940 223 / 2e-72 Leucine-rich repeat (LRR) family protein (.1) AT3G12610 167 / 1e-50 DRT100 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) AT3G47570 91 / 2e-21 Leucine-rich repeat protein kinase family protein (.1) AT3G05660 91 / 3e-21 AtRLP33 receptor like protein 33 (.1) AT3G12145 88 / 5e-21 FLOR1, FLR1 FLOR1, Leucine-rich repeat (LRR) family protein (.1) AT4G20140 89 / 2e-20 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 87 / 5e-20 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G24240 87 / 5e-20 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G07280 87 / 6e-20 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031824 [exp] 314 / 4e-108 AT3G20820 527 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10002551 [exp] 236 / 3e-77 AT3G20820 476 / 1e-168 Leucine-rich repeat (LRR) family protein (.1) Lus10031377 [exp] 200 / 1e-63 AT3G20820 433 / 3e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10010949 [exp] 197 / 2e-62 AT3G20820 440 / 8e-155 Leucine-rich repeat (LRR) family protein (.1) Lus10015700 [exp] 188 / 8e-60 AT3G12610 343 / 3e-118 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10037705 [exp] 189 / 2e-59 AT3G12610 438 / 6e-154 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Lus10021028 [exp] 88 / 1e-20 AT5G06860 362 / 2e-125 polygalacturonase inhibiting protein 1 (.1) Lus10014996 [exp] 89 / 2e-20 AT5G07280 1264 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10033924 [exp] 88 / 3e-20 AT1G75640 1332 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G017500 [exp] 227 / 6e-74 AT3G20820 504 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.003G207000 [exp] 216 / 1e-69 AT3G20820 488 / 1e-173 Leucine-rich repeat (LRR) family protein (.1) Potri.009G064300 [exp] 204 / 2e-65 AT3G12610 480 / 8e-171 DNA-DAMAGE REPAIR/TOLERATION 100, Leucine-rich repeat (LRR) family protein (.1) Potri.001G269800 [exp] 197 / 2e-62 AT3G20820 477 / 1e-169 Leucine-rich repeat (LRR) family protein (.1) Potri.003G156200 [exp] 103 / 1e-25 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G075000 [exp] 100 / 9e-25 AT4G20140 1371 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G065400 [exp] 100 / 2e-24 AT5G46330 1176 / 0.0 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 95 / 1e-22 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 90 / 5e-21 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.005G198000 [exp] 89 / 2e-20 AT1G34110 1381 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10031254 pacid=23150953 polypeptide=Lus10031254 locus=Lus10031254.g ID=Lus10031254.BGIv1.0 annot-version=v1.0 ATGCACCTCGATCTGCGTAACAACAGGTTCTACGGTCCGATCCCATTCGATTTCGGCCGGCTCAGGATGCTGAGCAGAGCGCTCCTGAGCCGAAACTACC TATCCGGTTCGATCCCCGATTCGGTTTCCAAGATCTACCGCCTGGCGGATCTGGATCTCTCCCTCAACAGGCTGACCGGTACAATCCCGCTGTCGCTCGG AAAGATGGCGGTGCTAGCGACGCTGAACCTCGACGGGAACATGATCACCGGGACGATCCCGGCGGATCTCCTGAGCTCGTCGGTGAACAATCTGAACCTG AGCAGGAACATGCTGGACGGGAAGCTGCCGGAGTTCGGGCCGAGGTCGTACTTCACGGCGCTGGATCTGTCGAGGAACCGCCTGGTCGGAGGGATCCCGG CGTCGATCGGGAGCGCGTCGTTCATCGGGCATTTGGATTTGAGCCACAACCATCTGTGCGGGAAGATTCCGTTGGGGTCGCCGTTTGACCACCTCGAAGC GGCGTCGTTTGAGTACAATGACTGCCTTTGCGGCCGGCCGCTTAGACCTTGTTTGACTAAACAGTAA
AA sequence Show only first row Show all	>Lus10031254 pacid=23150953 polypeptide=Lus10031254 locus=Lus10031254.g ID=Lus10031254.BGIv1.0 annot-version=v1.0 MHLDLRNNRFYGPIPFDFGRLRMLSRALLSRNYLSGSIPDSVSKIYRLADLDLSLNRLTGTIPLSLGKMAVLATLNLDGNMITGTIPADLLSSSVNNLNL SRNMLDGKLPEFGPRSYFTALDLSRNRLVGGIPASIGSASFIGHLDLSHNHLCGKIPLGSPFDHLEAASFEYNDCLCGRPLRPCLTKQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20820			Leucine-rich repeat (LRR) fami...		Lus10031254 [exp]	0	1
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10034227 [exp]	1.7	0.8706
AT5G52100		CRR1	chlororespiration reduction 1,...		Lus10027421 [exp]	4.0	0.8536
AT4G31690	B3	REM9	Transcriptional factor B3 fami...		Lus10042406 [exp]	4.7	0.8641
AT5G13460		IQD11	IQ-domain 11 (.1)		Lus10005315 [exp]	5.5	0.8635
AT2G07050		CAS1	cycloartenol synthase 1 (.1)		Lus10014538 [exp]	7.9	0.8058
AT2G40610		ATHEXPALPHA1.11...	expansin A8 (.1)		Lus10029038 [exp]	9.4	0.8335
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10042122 [exp]	9.4	0.8029
AT5G62360			Plant invertase/pectin methyle...		Lus10031717 [exp]	9.5	0.8515
					Lus10038294 [exp]	10.4	0.8407
AT3G29030		ATEXP5, ATHEXPA...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10033011 [exp]	10.9	0.8454

Compare expression of checked genes

Lus10031254 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.