Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42280 172 / 8e-53 bHLH bHLH130 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G51140 155 / 3e-46 bHLH bHLH122 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G43140 130 / 3e-37 bHLH bHLH129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G35460 121 / 4e-34 bHLH bHLH080 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05805 118 / 4e-32 bHLH bHLH128 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G09180 115 / 1e-31 bHLH bHLH081 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G24260 84 / 2e-19 bHLH LRL1, bHLH066 LJRHL1-like 1 (.1) AT4G30980 83 / 4e-19 bHLH LRL2, bHLH069 LJRHL1-like 2 (.1) AT5G58010 81 / 3e-18 bHLH LRL3, bHLH082 LJRHL1-like 3 (.1) AT5G50915 79 / 7e-18 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031826 [exp] 371 / 6e-131 AT1G51140 182 / 3e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10021023 [exp] 165 / 2e-48 AT3G12160 384 / 3e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10015704 [exp] 160 / 1e-47 AT2G42280 194 / 2e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10037484 [exp] 159 / 1e-47 AT2G42280 191 / 2e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10026733 [exp] 135 / 2e-40 AT2G43140 179 / 2e-56 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10025518 [exp] 131 / 7e-37 AT1G05805 242 / 2e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023829 [exp] 121 / 7e-33 AT3G12160 377 / 5e-132 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG A4D, RAB GTPase homolog A4D (.1) Lus10021846 [exp] 83 / 7e-19 AT2G24260 275 / 3e-90 LJRHL1-like 1 (.1) Lus10015909 [exp] 79 / 2e-17 AT4G02590 253 / 2e-82 unfertilized embryo sac 12, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207200 [exp] 218 / 8e-70 AT2G42280 221 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G017300 [exp] 196 / 1e-61 AT1G51140 237 / 7e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G050500 [exp] 181 / 1e-56 AT2G42280 296 / 2e-98 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.006G057600 [exp] 177 / 3e-55 AT2G42280 278 / 3e-92 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.009G064700 [exp] 174 / 8e-53 AT2G42280 225 / 5e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.001G270000 [exp] 163 / 1e-48 AT2G42280 198 / 7e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.002G231700 [exp] 137 / 1e-39 AT1G05805 274 / 6e-90 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G150600 [exp] 131 / 4e-37 AT1G05805 265 / 1e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.013G107500 [exp] 124 / 3e-35 AT1G35460 223 / 1e-72 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G079900 [exp] 122 / 2e-34 AT1G35460 228 / 1e-74 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10031255 pacid=23151163 polypeptide=Lus10031255 locus=Lus10031255.g ID=Lus10031255.BGIv1.0 annot-version=v1.0 ATGAGTCCTATTGCTGAGGTTGTTGATACTAAGAGCATTGTCTCCGAATCCAACAGACCGGAGAGTTCGAGTTTCGGAGATGCTAATGCTGGTGGTGGTG AGTATGTTACTGGTTTCCCATGGGATGATCCTCCTGGCGTCATGTCTGGTGGGAAAGGCGGGCTTTCGGAGGATGACAGGACCTTCTCTGGTCTCAATGA GTCCTCTCAGAATGTGGAGGGTGGAGGGAACAATCCACCGATGTTGGCGCACCACTTGAGCCTGCCGAAAACGGCTGCAGAGATGTCTGCACTGGAGAAG CTGTTGCATCTTCAAGATTCCGTGCCTTGCAAGATTCGGGCGAAGCGAGGGTTCGCCACTCATCCGAGAAGCATTGCTGAGAGGGTGAGGAGAACTCGAA TCAGCGAACGGATGAGGAAACTGCAGGATCTGGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGATTTGGCTGTTGACTACATTAAAGA TCTCCAAACACAAGTCAAAGTATGTATGGATTTAATGCTCATCTTACCAGAAGTATAA
AA sequence Show only first row Show all	>Lus10031255 pacid=23151163 polypeptide=Lus10031255 locus=Lus10031255.g ID=Lus10031255.BGIv1.0 annot-version=v1.0 MSPIAEVVDTKSIVSESNRPESSSFGDANAGGGEYVTGFPWDDPPGVMSGGKGGLSEDDRTFSGLNESSQNVEGGGNNPPMLAHHLSLPKTAAEMSALEK LLHLQDSVPCKIRAKRGFATHPRSIAERVRRTRISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLQTQVKVCMDLMLILPEV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42280	bHLH	bHLH130	basic helix-loop-helix (bHLH) ...		Lus10031255 [exp]	0	1
AT1G51140	bHLH	bHLH122	basic helix-loop-helix (bHLH) ...		Lus10031826 [exp]	2.2	0.6902
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Lus10005146 [exp]	15.5	0.7371
AT1G20450		LTI45, ERD10, L...	LOW TEMPERATURE INDUCED 45, LO...		Lus10005652 [exp]	32.6	0.6647
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10030924 [exp]	67.3	0.6514
AT3G54500			unknown protein		Lus10039553 [exp]	84.6	0.6036
AT2G37170		PIP2;2, PIP2B	PLASMA MEMBRANE INTRINSIC PROT...		Lus10019934 [exp]	134.1	0.6307

Compare expression of checked genes

Lus10031255 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.