Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12930 276 / 8e-89 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031827 [exp] 679 / 0 AT5G12930 305 / 6e-100 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207400 [exp] 364 / 1e-122 AT5G12930 305 / 2e-99 unknown protein Potri.001G017100 [exp] 357 / 5e-120 AT5G12930 310 / 4e-101 unknown protein Potri.003G207500 [exp] 272 / 1e-86 AT5G12930 226 / 1e-68 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031256 pacid=23151009 polypeptide=Lus10031256 locus=Lus10031256.g ID=Lus10031256.BGIv1.0 annot-version=v1.0 ATGGAAGAGCCCGACGGCTGCCTCAGCGGCTCCCGCGTTCCTCCGCTGCCGCCTCTGGTTTCTTTCACTCCGGCAGTGCATTCTCGCCGCCGGCGTCTCT GTTTCACTCCGACGACTCGTCAGCCGGTCACCTCGTCTCGGAACTTCGCTTGGGTGTCTCTCGAAGGACGCCTCGTCAACGCCCAGGAAGCCAGCTCGGC GAAATCCATCGGAGGGAGTTTGGGAAAGGATGAAGCTTTGGCTTGGGAGCTCTTCAGTCCGATTCAGAGGTTTCTCATTGTCGCTGTGATTGGCGTCGCC GCTTCCGATTCGAGGAAGAATCGGACCATCTCCCAGCTCAAGAAGTCCGTCGAGCTTAGGGATGAGGTGCTGTCGAGTATGCAGGAGAAGCTCGACAATC TGTGCGAGCAGATGATTAGCATCAAGGGACAGGGAGCTAAGGATGAGAAATCGAACGAATTCGGTTGTGATAAGATTAAGTTCGTCGATTGTGGATGTTG GCACTGTGATGAACACTTCCAGGAACTGTTTGGTGGTTCCATGGGGAAAGTGTCATGCTGTGAAGTGGATGAAACGATGGAGTTCAAAAGGGGAAACCAG GAGGAACAAGAAGAGAGGCGAATGTCTGATTTGTCTGATTGGGCTTCAAGTTCTGTGTCTGCATCAGAATTCCAGGTGGCTAACTATGCGGCAGACCAAG ATGTATGCAACCTGAAGAAAATGTGCGAGGAGAAGGATGCAACCATCAAGGAGCTAACCAATGTTCTTCAGTTAACAGACAATGCAGGTTCAAAGAGAGT TGCAGAGTTGGAAGACATCATATCCCGGAAGAACTCGGCGATTACAAGACTCAAGAAGGACATGCTTGTACTAGAACAGAAGGTGGTTCAGTTGACAAGG GCTCGCAGGAAATCATGTTCAAATGCAACAACCCTTGAGTTTGAGCAAGCTCCTCCATTGATGCTGGACAACATAATATACGACATGGATAGCTTGACCA GCTCTTGTTCTTCTTCTTCCTCCTCGGAATCAGATTCTCCTAAATTGAGAAGGAATTCGCTTCCGGCAACGAAGTTTTGTCAGAAATCAGCTCTAGAAAT GAAACAGCAGACTAGGCCAGTAAGTCCTCTCACAGAAATATCACCAAATCAGAAGCACAGCAGCGCACCTTCTGTAGCATTGAGGCCAAAGCAGTTGTCA GCTAATGGCGACATCAAGAAGATGAGAAGGAGGCCTCAAGCTGCATCATCGAGCTCGGTTTCGAAGAAGAGATGGTCGTAA
AA sequence Show only first row Show all	>Lus10031256 pacid=23151009 polypeptide=Lus10031256 locus=Lus10031256.g ID=Lus10031256.BGIv1.0 annot-version=v1.0 MEEPDGCLSGSRVPPLPPLVSFTPAVHSRRRRLCFTPTTRQPVTSSRNFAWVSLEGRLVNAQEASSAKSIGGSLGKDEALAWELFSPIQRFLIVAVIGVA ASDSRKNRTISQLKKSVELRDEVLSSMQEKLDNLCEQMISIKGQGAKDEKSNEFGCDKIKFVDCGCWHCDEHFQELFGGSMGKVSCCEVDETMEFKRGNQ EEQEERRMSDLSDWASSSVSASEFQVANYAADQDVCNLKKMCEEKDATIKELTNVLQLTDNAGSKRVAELEDIISRKNSAITRLKKDMLVLEQKVVQLTR ARRKSCSNATTLEFEQAPPLMLDNIIYDMDSLTSSCSSSSSSESDSPKLRRNSLPATKFCQKSALEMKQQTRPVSPLTEISPNQKHSSAPSVALRPKQLS ANGDIKKMRRRPQAASSSSVSKKRWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12930			unknown protein		Lus10031256 [exp]	0	1
AT3G42170			BED zinc finger ;hAT family di...		Lus10032337 [exp]	9.7	0.8979
AT5G12930			unknown protein		Lus10031827 [exp]	11.6	0.8903
AT4G22860			Cell cycle regulated microtubu...		Lus10006677 [exp]	11.7	0.8972
AT5G58280	B3		AP2/B3-like transcriptional fa...		Lus10007522 [exp]	23.8	0.8883
AT4G33400			Vacuolar import/degradation, V...		Lus10021729 [exp]	29.1	0.8874
AT2G07170			ARM repeat superfamily protein...		Lus10008545 [exp]	32.9	0.8873
AT4G33400			Vacuolar import/degradation, V...		Lus10042656 [exp]	35.1	0.8856
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Lus10027632 [exp]	38.4	0.8849
AT2G23530			Zinc-finger domain of monoamin...		Lus10000845 [exp]	41.6	0.8778
AT4G35050		NFC3, MSI3	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10027848 [exp]	43.0	0.8746

Compare expression of checked genes

Lus10031256 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.