Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12070 501 / 4e-175 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031828 [exp] 655 / 0 AT4G12070 416 / 7e-142 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G207600 [exp] 562 / 0 AT4G12070 546 / 0.0 unknown protein Potri.001G017000 [exp] 561 / 0 AT4G12070 543 / 0.0 unknown protein Potri.018G050100 [exp] 120 / 8e-29 AT4G12070 133 / 6e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10031257 pacid=23151011 polypeptide=Lus10031257 locus=Lus10031257.g ID=Lus10031257.BGIv1.0 annot-version=v1.0 ATGACCATGGACCGATCATCCGCCACCGTCGCCTCCGTCAACTCCTCACCGGACAGCCCCCCGCGCGCCTCCAGATCGACGATGGTCCTCTCGATCGACT GCCTGAAGGGCAGCTCCAAGGCCGACGAGTGGACCGGCGACCTCCTCCAGACCGGGGACATCGTGGAAGAGATCGTCATACCCGGGTCGGGTCGCAGCGG CTCCGGTTCCGGCCGCGGCGGAGAGTTGTACAGGGCTCCGTTCAAAGGCGGGAGAAGTGGGGTCCAGAAGATCCTCCACGCTTCGTTCAAGAGGAAGGAG ACGTCGATTTTGGTTCGGGTCAGGCGGTGCGACGGCGTCGTGTCGGAGCTCCAGGCTTGTATAGTTCCGGACTCCGGTTCGAAGAAGCAGTACATACTGA GGTCCATCGTCGATCCTAATTATACAGCCGGGTTTTGTGATCGGACCGAGTTCGAGTGTTTCGATTTGCAAGGTTCAAGAGGGTCAAGGATGGTGAGTGC ACTATCAACAGCAAAGCTCCAAGATGGGTATGTAGCATACCCATGGAAGAGGAAAATGCAAGAAGTTCTCCCCATTCCAAACTCAAGCGTCTTCCTCTCC ATCCTCCTCCTCCCCGAGGCATCATCATCATCCGATCGAGTCACCTCTCGCTACAACGACCTCGACCACACCCTCGCCAGGGCCAACACATGGCTCTTTG CCTCGCAGGCCTCTGGTGTCCCTGTGGTCTTCACGAACATCCAGACAGAGTCCCTCCTCACCAAGATATCCGGTGGGGACATGGCCACTCCGACTGTGAG CACTGGCTCACTCTCCGACCTCTCCAGCCTCGCGAACGCCAGCTTGTACGGATTCGAGGACTACCATGGTGTGGACCTAGGCGTGGTGAGGGCTGTCCGC CTGTGGTATGCCCCGCTATGCGGGGAGTCCTCGATCGAGATCAGGATCAAGGAGGACGACTCTAAGCTTGGGTTCGCGATTAGCAGGACTGAAGAAGGGT TCATCTACATTTCGTCGGTGATTGATGGTGGCGGTGATGACAATGTTGCCTCGACTAGGTCAGGGCTTAGTCACCTCTACAAGGAAGCGTCGGCCGCTTC AAAATTGTTGGTCGTTTCGAGGGTGTGTAACGAAAAGGTGCTGCCCTGGATGGTTAGTTCAACGGGCGCTGTCAGATGTTATGACACCGTTTCATTAAGC CAAAAACTGTCTCTCCACCTACACGCCAATGTCCCCATTGTGATACATTACTTGGTGTGGGACAGGGCGTTGGTGGCTAGTCGTCCTGGTTCGGTGAGCA CGAGGTTTGGTGGGTACGTGGGCATATCGCGACCTAATTATCAAAACCAAGTGCCCGCGCTTCCTCTCCCTCTTCCATCGCCTCCTCAAGTGGATTCCAG TGATGTTGATGCTGGTGCTGATGGTGGAACGGGGCCGGAAGTTAGGCTTCAACGAGATACTGCGGGAGAACTTTCGTTTCGATTTCACGAGTTCTCGATT TCCAACAACTGGGTATGA
AA sequence Show only first row Show all	>Lus10031257 pacid=23151011 polypeptide=Lus10031257 locus=Lus10031257.g ID=Lus10031257.BGIv1.0 annot-version=v1.0 MTMDRSSATVASVNSSPDSPPRASRSTMVLSIDCLKGSSKADEWTGDLLQTGDIVEEIVIPGSGRSGSGSGRGGELYRAPFKGGRSGVQKILHASFKRKE TSILVRVRRCDGVVSELQACIVPDSGSKKQYILRSIVDPNYTAGFCDRTEFECFDLQGSRGSRMVSALSTAKLQDGYVAYPWKRKMQEVLPIPNSSVFLS ILLLPEASSSSDRVTSRYNDLDHTLARANTWLFASQASGVPVVFTNIQTESLLTKISGGDMATPTVSTGSLSDLSSLANASLYGFEDYHGVDLGVVRAVR LWYAPLCGESSIEIRIKEDDSKLGFAISRTEEGFIYISSVIDGGGDDNVASTRSGLSHLYKEASAASKLLVVSRVCNEKVLPWMVSSTGAVRCYDTVSLS QKLSLHLHANVPIVIHYLVWDRALVASRPGSVSTRFGGYVGISRPNYQNQVPALPLPLPSPPQVDSSDVDAGADGGTGPEVRLQRDTAGELSFRFHEFSI SNNWV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12070			unknown protein		Lus10031257 [exp]	0	1
AT4G12070			unknown protein		Lus10031828 [exp]	1.0	0.9318
AT1G18390			Protein kinase superfamily pro...		Lus10029132 [exp]	2.4	0.9079
AT1G14780			MAC/Perforin domain-containing...		Lus10037426 [exp]	4.2	0.8886
AT1G65800		ARK2	receptor kinase 2 (.1)		Lus10007602 [exp]	6.5	0.8999
AT1G10500		ATCPISCA	chloroplast-localized ISCA-lik...		Lus10020827 [exp]	6.9	0.8766
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10025882 [exp]	8.9	0.9032
AT1G34300			lectin protein kinase family p...		Lus10006052 [exp]	11.0	0.8566
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Lus10005746 [exp]	11.2	0.8962
AT3G18950			Transducin/WD40 repeat-like su...		Lus10012036 [exp]	12.4	0.8817
AT4G21160		ZAC, AGD12	ARF-GAP domain 12, Calcium-dep...		Lus10023265 [exp]	19.0	0.8755

Compare expression of checked genes

Lus10031257 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.