Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G12950 1128 / 0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1) AT5G12960 1115 / 0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031829 [exp] 1608 / 0 AT5G12950 1078 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018200 [exp] 1306 / 0 AT5G12950 1190 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1) Potri.003G206000 [exp] 1291 / 0 AT5G12950 1154 / 0.0 Putative glycosyl hydrolase of unknown function (DUF1680) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0059 [flax] [poplar] 6_Hairpin PF07944 [flax] [poplar] Glyco_hydro_127 Beta-L-arabinofuranosidase, GH127
Representative CDS sequence Show only first row Show all	>Lus10031258 pacid=23151100 polypeptide=Lus10031258 locus=Lus10031258.g ID=Lus10031258.BGIv1.0 annot-version=v1.0 ATGATACTTTGTAAATCTCCAGTGTTGTTCTTCTCCTTGTTATTAGTACTGATTCTGCTGTGTGGGTTTTGCGAGAGTACTAAAGAGTGTACAAACAGCC CCAGTCAGCTCTCATCCCACACATTCCGTTATTCACTCCTAAAATCTACCAACTCAAGCTGGAAATCCGAGATGTTCTCCCATTACCACGACGATGATCA TTTGATTCCGACTGACGACTCAGCTTGGGCCAATCTGCTGCCCAGGAAGGTTTTGAGGGAGGAAGAGGAGTTCAACTGGGCAATGGAGTACAGAAAGATG AAGAATCCTTCTTTTGCTGGTGGGAGTTTCCTAAAGGAAGTGTCTTTGCACAATGTGAGGCTGGATCCTAACTCCTTGCATTGGAGGGCTCAGCAGACCA ATTTGGAGTACTTGCTGATGTTGGATGTTGATAGGCTGGTTTGGAGCTTCAGGAAGGAAGCTGGGTTCCAAACTCCTGGAACTCCTTATGGTGGCTGGGA AGGTGCTGATGTTGAGCTCAGAGGCCATTTTGTCGGACACTACATGAGTGCTACGGCAATGATGTATGCCAGCACTCACAATGACACTCTCAAAGACAAG ATGTCAGCTGTTGTGTCAGCTCTATCGAAATGCCAAGAGAAAATCGGCACAGGCTATCTATCTGCTTTCCCGGAGGAGTTTTTCGACCGTTTCGAGGCTG TGCAGCCTGTTTGGGCTCCTTATTACACCATTCACAAGATCATGGCAGGTCTCTTGGATCAGTACATCTTTGCCAACAATGCTCAAGCTCTAAAGATGGT GACATGGATGGCTGACTATTTCTATGGACGTGTCCAGAATGTCATAACCAAATACACCATAGAGCGACATTTTCGATCGCAGAACGAAGAAACTGGTGGC ATGAACGATATTCTCTACAAACTGTACAGCGTAACGGGGAATCCGAAGCATTTGATGCTAGGTCACCTCTTTGACAAGCCATGCTTCCTCGGCCTACTTG CGATGCAGGCTGATGACATTTCAGGATTCCATTCAAATACTCACATCCCAATTGTCATTGGGACACAAATGCGTTACGAACTCACTGGCGACACGCTTTA CAAGGATATTGGGACATACTTCATGGCGATTGTAAACTCTTCTCACAGTTATGCAACTGGTGGGACATCAGTCGGTGAGTTCTGGTCGGATCCAAAGAGG TTGGCCGGGACACTACAAACCGAGAACGAAGAATCGTGCACGACTTACAACATGCTCAAAGTCTCGCGTCACCTCTTTTGCTGGACCAAAGAAATTGCGT ACGCAGACTATTACGAGCGTGCCATTACCAATGGAGTCCTAGGCATCCAAAGAGGAACAGAACCCGGAGTGATGATTTACATGCTTCCACAAGCTCCTGG CAGTTCTAAGGGGAGAAGCTACCATGGATGGGGGACACCTGATTCATCCTTCTGGTGCTGCTACGGAACAGGAATCGAGTCGTTTTCAAAATTGGGAGAT TCGATATACTTCGAAGAGGAAGAAAATGCCCCGGGACTCTACATCACTCAATACATTTCAAGCTCCTTCGACTGGGAATCCGGACAGATCTTGCTCAGTC AGAAAGTCGATCCTGTTGTCTCTTCGGACCCTTTTCTTCGAGTCACATTGACAGTTTCTCCCAAAGAGGGTTCAAGTAAGTCATCTACTCTGAATCTGCG GATACCAAGCTGGGCCGATGTAGATGGCGTGGAAGCAGCTTTGAATGCGGAAAGTTTGCCTCTACCTGCTCCAGGAAACTTCCTTTCTGTGACAAAGAAA TGGAGCAGCAGTGACAAATTGACACTTCAGCTGCCTCTCAGTTGGAAAACAGAAGCCATCAAAGATGACAGGTCTGAGTATTCCTCCATAAAGGCAATCC TGTATGGCCCCTACTTACTTGCTGGACACACAAGTGGTGAATGGAACCTGAAACTCGGTTCAACCCTCTCTGATTCGATCAGCCCTATCCCTTCTGCATA CAACAGCCAACTACTCACCCTCTCACAGGAGTCTGGAACTCAGACATTCGTCATGACAAACACTAATGAATCGTCGATCACAATGGAAAAGCTGCCGACT CCTGGCACAGATGCATCTGTCCATGCCACATTCAGACTCATCTCGAAAAGCACGAAGCACTCTTCCGCGAAGCTCGAAGATCTTGTAGGCGAAGAAGTGA TGTTAGAGCCGTTTCATCTTCCGGGAATGGTCCTGATGCAGCAAGGAAAGGATCAAGCCATTCTGGTTAAAGAAGCTAGCTTTGTTGCAAAAGACCGGTC AGGTGAATTCCTCGTGGTGTCAGGATTGGATGGGAAGGAAGGGAGCGTGTCGTTCGAGTCGGTTAGCCAGAAGGGCTGCTTTGTGTTCAGTGGTGTTGGT TATGGTTCAGGAGCAATCCTGAAGCTCAGCTGTGGGAATTCGAGTCAGGAATTCGATAAAGGAGCAAGCTTTTCCCCGAATCAAGGGCTTAGCAAGTACC ATGACATCAGCTTTGTTGCAAAGGGGGAGACCAGGAATTTTGTTCTATCGCCATTGCATAGCTTCAGGGATGAGTCTTATACTGTTTACTTCCACTTCCG TTAG
AA sequence Show only first row Show all	>Lus10031258 pacid=23151100 polypeptide=Lus10031258 locus=Lus10031258.g ID=Lus10031258.BGIv1.0 annot-version=v1.0 MILCKSPVLFFSLLLVLILLCGFCESTKECTNSPSQLSSHTFRYSLLKSTNSSWKSEMFSHYHDDDHLIPTDDSAWANLLPRKVLREEEEFNWAMEYRKM KNPSFAGGSFLKEVSLHNVRLDPNSLHWRAQQTNLEYLLMLDVDRLVWSFRKEAGFQTPGTPYGGWEGADVELRGHFVGHYMSATAMMYASTHNDTLKDK MSAVVSALSKCQEKIGTGYLSAFPEEFFDRFEAVQPVWAPYYTIHKIMAGLLDQYIFANNAQALKMVTWMADYFYGRVQNVITKYTIERHFRSQNEETGG MNDILYKLYSVTGNPKHLMLGHLFDKPCFLGLLAMQADDISGFHSNTHIPIVIGTQMRYELTGDTLYKDIGTYFMAIVNSSHSYATGGTSVGEFWSDPKR LAGTLQTENEESCTTYNMLKVSRHLFCWTKEIAYADYYERAITNGVLGIQRGTEPGVMIYMLPQAPGSSKGRSYHGWGTPDSSFWCCYGTGIESFSKLGD SIYFEEEENAPGLYITQYISSSFDWESGQILLSQKVDPVVSSDPFLRVTLTVSPKEGSSKSSTLNLRIPSWADVDGVEAALNAESLPLPAPGNFLSVTKK WSSSDKLTLQLPLSWKTEAIKDDRSEYSSIKAILYGPYLLAGHTSGEWNLKLGSTLSDSISPIPSAYNSQLLTLSQESGTQTFVMTNTNESSITMEKLPT PGTDASVHATFRLISKSTKHSSAKLEDLVGEEVMLEPFHLPGMVLMQQGKDQAILVKEASFVAKDRSGEFLVVSGLDGKEGSVSFESVSQKGCFVFSGVG YGSGAILKLSCGNSSQEFDKGASFSPNQGLSKYHDISFVAKGETRNFVLSPLHSFRDESYTVYFHFR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G12950			Putative glycosyl hydrolase of...		Lus10031258 [exp]	0	1
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10030957 [exp]	3.2	0.9184
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	4.1	0.9353
AT5G12950			Putative glycosyl hydrolase of...		Lus10031829 [exp]	6.0	0.9191
AT3G49070			Protein of unknown function (D...		Lus10039258 [exp]	10.8	0.9316
					Lus10007415 [exp]	14.6	0.9194
AT3G47510			unknown protein		Lus10019094 [exp]	14.9	0.8572
AT1G49740			PLC-like phosphodiesterases su...		Lus10014072 [exp]	16.2	0.8338
AT5G60520			Late embryogenesis abundant (L...		Lus10022578 [exp]	18.5	0.9154
AT4G34210		ASK11	SKP1-like 11 (.1)		Lus10041874 [exp]	18.8	0.8967
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Lus10038721 [exp]	24.5	0.9078

Compare expression of checked genes

Lus10031258 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.