Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51170 246 / 3e-80 Protein kinase superfamily protein (.1) AT3G20830 244 / 2e-79 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT3G25250 188 / 2e-57 AtOXI1, OXI1, AGC2-1 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT4G13000 176 / 3e-53 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G58140 172 / 5e-49 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT3G45780 166 / 8e-47 RPT1, NPH1, JK224, PHOT1 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) AT3G12690 156 / 4e-44 AGC1.5 AGC kinase 1.5 (.1.2.3) AT1G79250 151 / 1e-42 AGC1.7 AGC kinase 1.7 (.1.2) AT5G40030 150 / 2e-42 Protein kinase superfamily protein (.1) AT3G14370 148 / 9e-42 WAG2 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031830 [exp] 375 / 6e-131 AT3G20830 416 / 1e-144 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10025882 [exp] 182 / 7e-55 AT3G25250 434 / 2e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10038221 [exp] 181 / 2e-54 AT3G25250 434 / 1e-150 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10026572 [exp] 168 / 1e-47 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 167 / 3e-47 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001355 [exp] 166 / 1e-46 AT5G58140 1141 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10036150 [exp] 157 / 1e-45 AT2G34650 521 / 0.0 PINOID, ABRUPTUS, Protein kinase superfamily protein (.1) Lus10018122 [exp] 157 / 2e-43 AT3G45780 1191 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Lus10043435 [exp] 144 / 2e-40 AT3G44610 466 / 2e-162 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205800 [exp] 266 / 2e-87 AT3G20830 475 / 5e-167 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.001G018300 [exp] 261 / 1e-85 AT3G20830 469 / 8e-165 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G248900 [exp] 190 / 3e-58 AT3G25250 419 / 7e-145 oxidative signal-inducible1, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.009G170550 [exp] 167 / 3e-51 AT5G58140 400 / 1e-134 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.004G209700 [exp] 171 / 1e-48 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.001G342000 [exp] 166 / 6e-47 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.010G236200 [exp] 150 / 9e-43 AT3G44610 497 / 2e-174 Protein kinase superfamily protein (.1) Potri.004G186200 [exp] 145 / 9e-41 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.009G146500 [exp] 143 / 3e-40 AT3G44610 548 / 0.0 Protein kinase superfamily protein (.1) Potri.001G435900 [exp] 143 / 7e-40 AT1G53700 475 / 4e-165 PROTEIN KINASE 3 ARABIDOPSIS THALIANA, WAG 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031259 pacid=23150992 polypeptide=Lus10031259 locus=Lus10031259.g ID=Lus10031259.BGIv1.0 annot-version=v1.0 ATGGGGATCGCTTACAGAGATCTGAAGCCGGAGAACATTCTGATTCAGCAGTCCGGTCATGTCACTCTGACGGATTTCGACCTTTCCAGATTCCTCGGGG GGAAGAAAAAACAGAGTGTCGTCGGGTTGGACGATTTTGATGACTGCCGCCGGATTCCAGCGAGAAATGGATGCGGGCGGGGGGGGGTGGAGGAGGAGGA GAAGCCAGCCGGCGAGGAGAGGTCGTACTCGTTTGTGGGAACGGAGGAGTACGTTTCGCCGGAAGTGGTGAGAGGCGACGGGCACGAGTTCGCCGTCGAT TGGTGGGCCCTAGGGATCTTAGGCTACGAGATGACTTATGGGACGACGCCGTTTAAAGGGAAGAATCGGAAAGAAACGTTTCGGAACGTGGTGACGAAAA AGCCGGAGTTTCTGGGTAACCGGACGAGCGAGCTGACCGACCTGATCGGACGGCTGCTAGAGAAGGATCCGACGAAGCGGCTGGGGTATCTACGGGGAGC TGCGGAGATTAAGGAGCACGCGTTCTTTCGGGGCGTGAAGTGGGAAATGCTGACGGAGGTTCTCCGCCCGCCGTTCATTCCGCCGTCTAAGGAGGAGACG GAGAAATCCGGAGGGATTGAGATAAGGGAGTACTTTATGAAGCTGAGAGCACCGCCGCCGATGTCGGCTCCGGAATCAACGTCGTCGTCGATGTCGGAGT ACTGTAGGAATATTTCTCTAGCGGAATTCTAA
AA sequence Show only first row Show all	>Lus10031259 pacid=23150992 polypeptide=Lus10031259 locus=Lus10031259.g ID=Lus10031259.BGIv1.0 annot-version=v1.0 MGIAYRDLKPENILIQQSGHVTLTDFDLSRFLGGKKKQSVVGLDDFDDCRRIPARNGCGRGGVEEEEKPAGEERSYSFVGTEEYVSPEVVRGDGHEFAVD WWALGILGYEMTYGTTPFKGKNRKETFRNVVTKKPEFLGNRTSELTDLIGRLLEKDPTKRLGYLRGAAEIKEHAFFRGVKWEMLTEVLRPPFIPPSKEET EKSGGIEIREYFMKLRAPPPMSAPESTSSSMSEYCRNISLAEF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031259 [exp]	0	1
AT5G51670			Protein of unknown function (D...		Lus10031691 [exp]	4.5	0.8604
AT2G25430			epsin N-terminal homology (ENT...		Lus10002920 [exp]	4.6	0.9050
AT3G46450			SEC14 cytosolic factor family ...		Lus10004953 [exp]	7.0	0.8325
AT4G15248	CO		B-box type zinc finger family ...		Lus10039694 [exp]	10.2	0.8938
AT3G20830			AGC (cAMP-dependent, cGMP-depe...		Lus10031830 [exp]	12.6	0.8514
AT2G36330			Uncharacterised protein family...		Lus10032147 [exp]	13.3	0.8602
AT2G38050		DWF6, DET2, ATD...	DWARF 6, DE-ETIOLATED 2, 3-oxo...		Lus10021127 [exp]	13.8	0.8695
AT1G55910		ZIP11	zinc transporter 11 precursor ...		Lus10016609 [exp]	14.9	0.8680
AT1G59740			Major facilitator superfamily ...		Lus10007437 [exp]	15.5	0.8446
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	15.9	0.8785

Compare expression of checked genes

Lus10031259 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.