Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13070 314 / 2e-108 MSF1-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031832 [exp] 378 / 1e-133 AT5G13070 315 / 3e-111 MSF1-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018500 [exp] 324 / 2e-112 AT5G13070 333 / 2e-118 MSF1-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [flax] [poplar] Bet_v_1_like PF04707 [flax] [poplar] PRELI PRELI-like family
Representative CDS sequence Show only first row Show all	>Lus10031261 pacid=23150939 polypeptide=Lus10031261 locus=Lus10031261.g ID=Lus10031261.BGIv1.0 annot-version=v1.0 ATGGAGGAATTGGTTTTGTTGAGTCACCTAGCACGCGAAGATATCTCCGAATATTCGAAACCCGTTGACGAATGTCGAATTGGGATGGAAATGATGATAG ATTATGAGGCAATATGCTTCGTAAACCCACCTATCCACATCCCATTCTCTTCTCGAAGCACCCTACCGATCCCCGCACTTTGCTCCGAATCTGTAACACT AGCAAAAGGGCTTACTAATTCACACTATACACTATTCTGGACTAAGGATCCAGCTAGCGGCCCAATGAAGGCAGCTTGGGGCCCAATGAAGGCAGATGAG CCCATTAAAACTGCCGGAAATTTCTCGGTTAGATCCAAACCAAAACAACCACCGCCATCCGCCACCGATATCAGATCGTCAGCGGAACAAATTCCTTTTC TTCTCCGCCGTCTCAGCTTTTCTTACAGCTCTTCTCTCGTCAATCAATGGAAAGAAGAAAAGATGGTGAAAGCATACACGCAAGAGCATATTTATAAGCA TCCATGGGAGAGAGTAACATCAGCAGCCTGGCGAAAATTTTCGGACCCGGAAAACAAAAGCACTTTGAAGCACATACTCAACGTGGACACGCTGAGCCAG AAGCTCGATACTCAGTCCGGGAAGCTATACACGACTCGCGCCATCACCATCCATGCTCCGGGGCCATGGTTTGTTCGCAAGATGGTCGGTCAGGAGGTAT GCAATTGTGTCGAGTCGACAGTTGTTGATGGGCGAACCCGGTCAATGCAGCTCACGACTCGAAACATCAGTCTCGAGAAGTTCATCGAAGTGGAGGAGAA GATCCAGTACGAACCGCACCCTGATAATCCAAGCAGGTGGACGTTGTGTAAACAGCAGACTAGTATTCGGATCAAACCGCGGTCTACCTTGGCGTCGATG GCCGAGAAGTTGGAGCAGAAATGTGCTGATAGGTTCATGCAGAATAGTGTTAAAGGTAGGGAGGTTATGGAGAGGATCTGTAAGTATCTCGAGTCCGAAT CCAAGGGAATCCGCTTGTGA
AA sequence Show only first row Show all	>Lus10031261 pacid=23150939 polypeptide=Lus10031261 locus=Lus10031261.g ID=Lus10031261.BGIv1.0 annot-version=v1.0 MEELVLLSHLAREDISEYSKPVDECRIGMEMMIDYEAICFVNPPIHIPFSSRSTLPIPALCSESVTLAKGLTNSHYTLFWTKDPASGPMKAAWGPMKADE PIKTAGNFSVRSKPKQPPPSATDIRSSAEQIPFLLRRLSFSYSSSLVNQWKEEKMVKAYTQEHIYKHPWERVTSAAWRKFSDPENKSTLKHILNVDTLSQ KLDTQSGKLYTTRAITIHAPGPWFVRKMVGQEVCNCVESTVVDGRTRSMQLTTRNISLEKFIEVEEKIQYEPHPDNPSRWTLCKQQTSIRIKPRSTLASM AEKLEQKCADRFMQNSVKGREVMERICKYLESESKGIRL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13070			MSF1-like family protein (.1)		Lus10031261 [exp]	0	1
AT2G04630		NRPE6B, NRPB6B	RNA polymerase Rpb6 (.1)		Lus10015000 [exp]	7.1	0.8808
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	11.0	0.8807
AT2G28910		CXIP4	CAX interacting protein 4 (.1)		Lus10004961 [exp]	16.0	0.8403
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	22.3	0.8715
AT3G22320		RPB5A, NRPD5, N...	RNA POLYMERASE II FIFTH LARGES...		Lus10001335 [exp]	22.4	0.8615
AT5G49210			unknown protein		Lus10037138 [exp]	22.6	0.8377
AT5G47570			unknown protein		Lus10000735 [exp]	24.7	0.8365
AT1G29990		PFD6, PDF6	prefoldin 6 (.1)		Lus10038496 [exp]	26.1	0.8224
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	26.2	0.8703
AT5G64140		RPS28	ribosomal protein S28 (.1)		Lus10013543 [exp]	26.9	0.7993

Compare expression of checked genes

Lus10031261 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.