Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51200 175 / 2e-56 A20/AN1-like zinc finger family protein (.1.2.3.4) AT2G36320 135 / 4e-41 A20/AN1-like zinc finger family protein (.1) AT2G27580 124 / 2e-36 A20/AN1-like zinc finger family protein (.1.2) AT3G52800 123 / 5e-36 A20/AN1-like zinc finger family protein (.1) AT1G12440 122 / 1e-35 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 119 / 2e-34 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT4G22820 108 / 5e-30 A20/AN1-like zinc finger family protein (.1.2) AT3G12630 97 / 6e-26 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT4G25380 88 / 1e-22 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1) AT4G14225 86 / 8e-22 A20/AN1-like zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031833 [exp] 274 / 1e-95 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10007015 [exp] 132 / 9e-40 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10006671 [exp] 132 / 2e-39 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10003246 [exp] 127 / 1e-37 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10028903 [exp] 125 / 8e-37 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10008912 [exp] 125 / 1e-36 AT1G12440 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2) Lus10015697 [exp] 100 / 3e-27 AT3G12630 178 / 1e-57 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10037702 [exp] 100 / 5e-27 AT3G12630 176 / 1e-56 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Lus10035603 [exp] 99 / 6e-27 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205500 [exp] 224 / 8e-76 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G018600 [exp] 218 / 2e-73 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.016G051700 [exp] 202 / 3e-67 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.006G056500 [exp] 197 / 3e-65 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.007G078500 [exp] 126 / 1e-37 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.001G115000 [exp] 127 / 2e-37 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.009G144100 [exp] 124 / 2e-36 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.004G184300 [exp] 121 / 3e-35 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.003G117100 [exp] 117 / 1e-33 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2) Potri.001G269400 [exp] 108 / 5e-30 AT3G12630 160 / 2e-50 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01754 [flax] [poplar] zf-A20 A20-like zinc finger PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10031262 pacid=23151119 polypeptide=Lus10031262 locus=Lus10031262.g ID=Lus10031262.BGIv1.0 annot-version=v1.0 ATGGACCATGACGAGGCAGGCTGCCAGGCTCCTTCCGATCATCCTATTCTGTGCGTTAACAATTGCGGCTTCTTCGGAAGTGCTGCCACCATGAACATGT GCTCAAAGTGCCACAAGGATACGATGCTAAACCAAGAGCAATCCAAGCTTGCTGCTTCATCGGCAGCAAGTATCCTCAACGGATCGTCGATGAGCCTCGG AAGGGAACTCGTTATTGCTGCTAAGACCAATTCGGTAGAACCCAAGACCATCTCCGTCCAACCATCTTCTGCTTCAAGTGCTGAAGAGAGTATCGAAATG AAGCTGCCAAAAGAAGGGCCCAGTAGGTGCAACACTTGCAACAAACGTGTCGGTTTGACCGGATTCAAATGTCGGTGCGAGAACATGTTCTGCGCAAACC ATCGCTACTCGGACAAGCACAATTGCCCCTTTGATTACCGCACTGCTGGCCGGGAAGCTATCTCAAAGGCCAATCCTTTGGTGAAGGCGGAGAAGCTCGA CAAAATCTGA
AA sequence Show only first row Show all	>Lus10031262 pacid=23151119 polypeptide=Lus10031262 locus=Lus10031262.g ID=Lus10031262.BGIv1.0 annot-version=v1.0 MDHDEAGCQAPSDHPILCVNNCGFFGSAATMNMCSKCHKDTMLNQEQSKLAASSAASILNGSSMSLGRELVIAAKTNSVEPKTISVQPSSASSAEESIEM KLPKEGPSRCNTCNKRVGLTGFKCRCENMFCANHRYSDKHNCPFDYRTAGREAISKANPLVKAEKLDKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	0	1
AT2G23780			RING/U-box superfamily protein...		Lus10022492 [exp]	1.0	0.9164
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031833 [exp]	1.4	0.8944
AT3G15140			Polynucleotidyl transferase, r...		Lus10024133 [exp]	1.7	0.8876
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	2.0	0.8838
AT3G20300			Protein of unknown function (D...		Lus10024308 [exp]	5.9	0.8680
AT3G47300		SELT	SELT-like protein precursor (....		Lus10040658 [exp]	6.5	0.8596
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	7.0	0.8571
AT3G58840		PMD1	peroxisomal and mitochondrial ...		Lus10010937 [exp]	9.0	0.8431
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10018296 [exp]	9.5	0.8316
AT2G34690		ACD11	ACCELERATED CELL DEATH 11, Gly...		Lus10038537 [exp]	9.5	0.8349

Compare expression of checked genes

Lus10031262 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.