Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20860 343 / 2e-116 ATNEK5 NIMA-related kinase 5 (.1) AT3G12200 219 / 3e-66 ATNEK7 NIMA-related kinase 7 (.1.2) AT3G44200 212 / 1e-61 IBO1, ATNEK6 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) AT3G04810 206 / 4e-61 ATNEK2 NIMA-related kinase 2 (.1.2) AT3G63280 197 / 3e-58 ATNEK4 NIMA-related kinase 4 (.1.2) AT5G28290 197 / 4e-58 ATNEK3 NIMA-related kinase 3 (.1) AT1G54510 196 / 3e-57 ATNEK1 NIMA-related serine/threonine kinase 1 (.1.2.3) AT1G53165 87 / 2e-18 ATMAP4KALPHA1 ,ATMAP4K ALPHA1 Protein kinase superfamily protein (.1.2.3) AT1G53570 84 / 1e-17 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G50240 84 / 2e-17 FU FUSED, Protein kinase family protein with ARM repeat domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031834 [exp] 634 / 0 AT3G20860 563 / 0.0 NIMA-related kinase 5 (.1) Lus10040499 [exp] 254 / 3e-79 AT3G20860 476 / 2e-164 NIMA-related kinase 5 (.1) Lus10011301 [exp] 251 / 7e-76 AT3G20860 470 / 2e-157 NIMA-related kinase 5 (.1) Lus10001857 [exp] 217 / 2e-63 AT3G44200 854 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10013338 [exp] 217 / 3e-63 AT3G44200 845 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Lus10020244 [exp] 206 / 1e-61 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10001783 [exp] 204 / 1e-60 AT1G54510 705 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Lus10042632 [exp] 204 / 3e-60 AT3G04810 671 / 0.0 NIMA-related kinase 2 (.1.2) Lus10015928 [exp] 177 / 2e-50 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G018700 [exp] 290 / 1e-93 AT3G20860 503 / 1e-175 NIMA-related kinase 5 (.1) Potri.003G205400 [exp] 282 / 8e-91 AT3G20860 486 / 5e-169 NIMA-related kinase 5 (.1) Potri.016G051900 [exp] 263 / 2e-82 AT3G20860 474 / 5e-163 NIMA-related kinase 5 (.1) Potri.006G056300 [exp] 259 / 4e-81 AT3G20860 473 / 2e-162 NIMA-related kinase 5 (.1) Potri.001G218100 [exp] 214 / 2e-62 AT3G44200 895 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.009G020100 [exp] 211 / 3e-61 AT3G44200 869 / 0.0 "NIMA \(never in mitosis, gene A\)-related 6", NIMA-RELATED KINASE6, NIMA (never in mitosis, gene A)-related 6 (.1) Potri.002G049400 [exp] 202 / 1e-59 AT3G04810 659 / 0.0 NIMA-related kinase 2 (.1.2) Potri.005G051600 [exp] 199 / 2e-58 AT3G04810 699 / 0.0 NIMA-related kinase 2 (.1.2) Potri.013G039000 [exp] 197 / 6e-58 AT1G54510 694 / 0.0 NIMA-related serine/threonine kinase 1 (.1.2.3) Potri.010G092000 [exp] 86 / 3e-18 AT3G06030 698 / 0.0 NPK1-related protein kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10031265 pacid=23151152 polypeptide=Lus10031265 locus=Lus10031265.g ID=Lus10031265.BGIv1.0 annot-version=v1.0 ATGCTCTGCAAGTGGCTGACTCAACTTCTGCTAGCACTGGACTATCTCCATTCCAACCGGGTTCTTCACAGGGATTTGAAATGCTCGAATATATTCCTTT CGAAAGACAACGACATTCAGCTAGGTGACTTTGGACTAGCGAAATTGCTCGGGGATGATGACCTTGCATCCACAGTGGTGGGAACTCCCAAATACATGTG CCCCGAGCTTCTTGCAGATATACCCTACGGCTATAAATCAGATATCTGGTCATTAGGTTGCAGCATGTTTGAGATAGCTGCACATCAGCCTGCTTTCAGG GCTCCTGATATGGCTGGACTGATTCACAAGATAAACCGTGGCTCAATTTCTCCACTTCCACCTTCTTACTCCTCTTCATTAAAACAACTGATCAAGTTCA TGCTAAGGAAGAGCCCGGAGCACCGGCCTACGGCTGCAGAGTTGTTGAGACACCCTCACTTACAGCCATATGTTGCTCAATGTCAAAACCCGTCTCCTGT CTTTCTCCCAGTGAAGTCTGAGCATATCCCCAATAAGGATAAGCCAAAGGCTGCAAGACCACCATGTAACAATAGCATCAAAGCTTTCGAGCAACAACAC ATTGACGATTTCTGCAAGAAAGTGTCTGATATGAAGAAAACTGCCAAACTCACCTCTGATCATATCCGACCGAGAAACTGCCCAGAGAATATGACCCCAC CTCGAAGTAACCGAATGCCAGCCAAGGCTGATCCTGCAACACAAACAACAAAAGAATTACAGGGAACTTCCAGCGACACGTCTGGAGTGACCATGCTGAC TCTTGTGCAAGGAGAAGAGATCAGGGTTGAATGGGACGTTCAGAGCACTCAAAGAGCAGAAGCACTGGAATCATTGCTGGAGATCTGTGCAGGCCTGCTC AGACGAGAAAGGTTCGACGAACTTGCTGGCGTGCTGAAACCCTTTGGCGAAGAAGCAGTATCATCAAAAGAAACAGCCATCTGGCTAACAAAAAGCCTCA TGAAGATACACCATAAACGTAATGGAACAACTTGA
AA sequence Show only first row Show all	>Lus10031265 pacid=23151152 polypeptide=Lus10031265 locus=Lus10031265.g ID=Lus10031265.BGIv1.0 annot-version=v1.0 MLCKWLTQLLLALDYLHSNRVLHRDLKCSNIFLSKDNDIQLGDFGLAKLLGDDDLASTVVGTPKYMCPELLADIPYGYKSDIWSLGCSMFEIAAHQPAFR APDMAGLIHKINRGSISPLPPSYSSSLKQLIKFMLRKSPEHRPTAAELLRHPHLQPYVAQCQNPSPVFLPVKSEHIPNKDKPKAARPPCNNSIKAFEQQH IDDFCKKVSDMKKTAKLTSDHIRPRNCPENMTPPRSNRMPAKADPATQTTKELQGTSSDTSGVTMLTLVQGEEIRVEWDVQSTQRAEALESLLEICAGLL RRERFDELAGVLKPFGEEAVSSKETAIWLTKSLMKIHHKRNGTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031265 [exp]	0	1
AT4G17220		ATMAP70-5	microtubule-associated protein...		Lus10038790 [exp]	2.0	0.9731
AT1G68585			unknown protein		Lus10035025 [exp]	2.4	0.9719
AT5G60520			Late embryogenesis abundant (L...		Lus10022578 [exp]	2.6	0.9617
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031834 [exp]	3.5	0.9693
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10004887 [exp]	3.9	0.9713
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	4.2	0.9650
AT4G20090		EMB1025	embryo defective 1025, Pentatr...		Lus10038398 [exp]	4.7	0.9530
AT1G72620			alpha/beta-Hydrolases superfam...		Lus10019631 [exp]	5.0	0.9692
					Lus10025505 [exp]	5.2	0.9554
AT1G24764		ATMAP70-2	microtubule-associated protein...		Lus10039069 [exp]	8.1	0.9524

Compare expression of checked genes

Lus10031265 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.