Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51790 128 / 2e-37 ATG1 transmembrane protein G1P-related 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031835 [exp] 255 / 4e-87 AT3G51790 306 / 2e-105 transmembrane protein G1P-related 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G205200 [exp] 145 / 4e-44 AT3G51790 306 / 2e-105 transmembrane protein G1P-related 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF03100 [flax] [poplar] CcmE CcmE
Representative CDS sequence Show only first row Show all	>Lus10031267 pacid=23151003 polypeptide=Lus10031267 locus=Lus10031267.g ID=Lus10031267.BGIv1.0 annot-version=v1.0 ATGGCATCTCGCTCCTTCCTCCACCGTATCAGATCTCAGCTTCTCCGCTCCTCGACTACCTCCACCGCAGCTGCTGGATCCTGGCCTGGAATCTTCCTTT CCACTCGCCAGCTCACATCCAAACGGATGATTCTCTCTCCAGTTTCAGATCTCCGCTCAGCTTACACCGACTCGACTTCGATCTCCGGGATACGGTTCTT CTCCACTGCGCGCCGCCATCCGTCGCGGCCGAAGGCCGTGGACATAGGAGCTCGAGCTCGTCAACTGCAGACCAGGCGACTCTGGACGTACGCGCTCGCC TTCAGCGGCGTGGCCGGTTTCATAGTCATCGTTCTGAACAATTTCCAGGACCAGATGGTGTTCTACGTGACTCCGAGCGACGCGATTGAGCAGTACAGGG CGAATCCGAAGAAGACGAAGTTCAGATTGCAAAGAAGCTGA
AA sequence Show only first row Show all	>Lus10031267 pacid=23151003 polypeptide=Lus10031267 locus=Lus10031267.g ID=Lus10031267.BGIv1.0 annot-version=v1.0 MASRSFLHRIRSQLLRSSTTSTAAAGSWPGIFLSTRQLTSKRMILSPVSDLRSAYTDSTSISGIRFFSTARRHPSRPKAVDIGARARQLQTRRLWTYALA FSGVAGFIVIVLNNFQDQMVFYVTPSDAIEQYRANPKKTKFRLQRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031267 [exp]	0	1
AT3G51790		ATG1	transmembrane protein G1P-rela...		Lus10031835 [exp]	2.4	0.8428
AT1G77405			Pentatricopeptide repeat (PPR)...		Lus10042736 [exp]	7.6	0.8089
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10017612 [exp]	15.5	0.7553
AT3G13110		SAT-M, SAT-A, S...	SERINE ACETYLTRANSFERASE 3, SE...		Lus10040503 [exp]	17.4	0.7753
AT4G10040		CYTC-2	cytochrome c-2 (.1)		Lus10008922 [exp]	20.4	0.7807
AT1G04980		ATPDI10, ATPDIL...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10031522 [exp]	30.1	0.7546
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Lus10040358 [exp]	33.8	0.7455
AT3G57400			unknown protein		Lus10042067 [exp]	37.0	0.7340
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Lus10033570 [exp]	37.8	0.7179
AT5G19180		ECR1	E1 C-terminal related 1 (.1)		Lus10034043 [exp]	38.4	0.7518

Compare expression of checked genes

Lus10031267 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.